PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000767097
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 343aa    MW: 38048.9 Da    PI: 5.5861
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000767097genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.53.3e-29131192159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    ldDg++WrKYGqK++ g+++pr+YYrCt++   +C ++k+v+rs+edp+++eitY+g+H+++
  MDP0000767097 131 LDDGFSWRKYGQKDILGARYPRGYYRCTHRnvqDCFATKQVQRSDEDPTIFEITYRGRHTCT 192
                    59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-28126193IPR003657WRKY domain
SuperFamilySSF1182901.16E-25129193IPR003657WRKY domain
PROSITE profilePS5081121.735131189IPR003657WRKY domain
SMARTSM007748.7E-40131193IPR003657WRKY domain
PfamPF031063.1E-26132191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MENCNIHWEQ RSLVNELAQG RELARQLQID LNAPSSSHGT RELLVQKIVL SYEKALSILN  60
SIGSPSGCEQ QQPTGHVATR MVESPPHSLN GSPWSEDSDH DNKDSSRKRK TLPRWTQQIR  120
VSSGMRLEGP LDDGFSWRKY GQKDILGARY PRGYYRCTHR NVQDCFATKQ VQRSDEDPTI  180
FEITYRGRHT CTQASPGTST PPSPSPLPPE RTEPQNNLVE SQQNQQHSQQ NMLLNIPEGL  240
RVISEGLDIS EELFPSFNNP SPLNNNYLGS FSPPFAGPTT SGTNYFSMSQ QGFGAEQNFQ  300
SGDIISPATS AANSPSVGLD FPFGQDDHLF PNFSFDGPGF FS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-20131191868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105110SRKRKT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008376693.10.0probable WRKY transcription factor 53
RefseqXP_028962031.10.0probable WRKY transcription factor 53
SwissprotQ8H0Y88e-56WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLA0A498JMW80.0A0A498JMW8_MALDO; Uncharacterized protein
STRINGXP_008376693.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-56WRKY family protein
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]