PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000763731 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 741aa MW: 80998.9 Da PI: 6.122 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.8 | 1.1e-19 | 64 | 119 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+ q++e+e++F+ +++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k MDP0000763731 64 RKRYHRHTQRQIQEMEAFFKDCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 119 789999***********************************************998 PP | |||||||
2 | START | 209.3 | 1.5e-65 | 257 | 479 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 ela +a++el+++a+a++p+W e++n+de+l++f+++ + ++ea+r++++v+m++++lve+l+d++ qW++ + +a+t MDP0000763731 257 ELAVAAMEELIRMAEAGDPLWXPGDhnsihqEILNEDEYLRTFPRGIGpkplgLKSEASRETALVIMNHVNLVEILMDVN-QWSTVFCgivsRAMT 351 57899****************9777788899**************999********************************.******99999**** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 l+ +s+g galq+m+ae+q++splvp R+ +fvRy++q +g+w++vdvS+ + ++ p v R++++pSg+li++++ng+skv+wvehv MDP0000763731 352 LDILSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQNVDGTWAVVDVSLXNLRQSP----VSRSRRRPSGCLIQELQNGYSKVIWVEHV 443 ************************************************************988....79*************************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++++ +h+++r+lv+sgla+gak+wvatl+rqc++ MDP0000763731 444 EVDDSAVHNIYRPLVNSGLAFGAKRWVATLDRQCQR 479 **********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-22 | 45 | 119 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.6E-19 | 46 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.811 | 61 | 121 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.4E-19 | 62 | 125 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.00E-18 | 63 | 122 | No hit | No description |
Pfam | PF00046 | 2.8E-17 | 64 | 119 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 96 | 119 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.544 | 248 | 482 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.3E-33 | 249 | 481 | No hit | No description |
CDD | cd08875 | 5.37E-124 | 252 | 478 | No hit | No description |
SMART | SM00234 | 1.1E-66 | 257 | 479 | IPR002913 | START domain |
Pfam | PF01852 | 1.2E-54 | 258 | 479 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.3E-5 | 361 | 479 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 7.22E-26 | 500 | 731 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 741 aa Download sequence Send to blast |
MLQPSMFENH ILDHMTTSST HKTSDSTGRL LDDDFETKSG TETTMDAPSG DEQDPNATXP 60 RPKRKRYHRH TQRQIQEMEA FFKDCPHPDD KQRKELSREL GLEPLQVKFW FQNKRTQMKA 120 QHERHENSIL KSENDKLRAE NNRYKEALAN ATCPNCGGPA AIGEMSFDEQ HLRIENARLH 180 EEIDKISSIA AKYVGKPLTS SFSSHMPSHV PSGRSLDLGV GSFGTQPGFV GEMYGSSTDL 240 LRSVSVLTEA DKPMIVELAV AAMEELIRMA EAGDPLWXPG DHNSIHQEIL NEDEYLRTFP 300 RGIGPKPLGL KSEASRETAL VIMNHVNLVE ILMDVNQWST VFCGIVSRAM TLDILSTGVA 360 GNYNGALQVM TAEFQVPSPL VPTRENYFVR YCKQNVDGTW AVVDVSLXNL RQSPVSRSRR 420 RPSGCLIQEL QNGYSKVIWV EHVEVDDSAV HNIYRPLVNS GLAFGAKRWV ATLDRQCQRL 480 ASSMASNIPA GELCVITSAE GRKSMLKLAQ RLVMSFCTGV GASTAHAWTT LSATGSDDVR 540 VMTRKSMDDP GRPPGIVLSA ATSFWIPVPP KRVFDFLRDE NSRSEWDILS NGGLVQEMAH 600 IANGRDPGNC VSLLRVNSAN SSQSNMLILQ ESCTDSTGSY VIYAPVDIVA MNVVLSGGDP 660 DYVALLPSGF AILPDGPAGS AGGGTLDVGS GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN 720 NLIKCTVERI RAAVTCEQNP * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in the layer 1 (L1) of shoot meristems. {ECO:0000269|PubMed:12505995}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008384034.2 | 0.0 | homeobox-leucine zipper protein MERISTEM L1-like | ||||
Refseq | XP_028943413.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1-like | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | A0A498IV16 | 0.0 | A0A498IV16_MALDO; Uncharacterized protein | ||||
STRING | XP_008384034.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1508 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000763731 |
Publications ? help Back to Top | |||
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