PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000763731
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 741aa    MW: 80998.9 Da    PI: 6.122
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000763731genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81.1e-1964119156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    r++ +++t+ q++e+e++F+ +++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  MDP0000763731  64 RKRYHRHTQRQIQEMEAFFKDCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 119
                    789999***********************************************998 PP

2START209.31.5e-652574791206
                    HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
          START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                    ela +a++el+++a+a++p+W          e++n+de+l++f+++ +      ++ea+r++++v+m++++lve+l+d++ qW++ +     +a+t
  MDP0000763731 257 ELAVAAMEELIRMAEAGDPLWXPGDhnsihqEILNEDEYLRTFPRGIGpkplgLKSEASRETALVIMNHVNLVEILMDVN-QWSTVFCgivsRAMT 351
                    57899****************9777788899**************999********************************.******99999**** PP

                    EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
          START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                    l+ +s+g      galq+m+ae+q++splvp R+ +fvRy++q  +g+w++vdvS+ + ++ p    v R++++pSg+li++++ng+skv+wvehv
  MDP0000763731 352 LDILSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQNVDGTWAVVDVSLXNLRQSP----VSRSRRRPSGCLIQELQNGYSKVIWVEHV 443
                    ************************************************************988....79*************************** PP

                    E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                    +++++ +h+++r+lv+sgla+gak+wvatl+rqc++
  MDP0000763731 444 EVDDSAVHNIYRPLVNSGLAFGAKRWVATLDRQCQR 479
                    **********************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-2245119IPR009057Homeodomain-like
SuperFamilySSF466894.6E-1946121IPR009057Homeodomain-like
PROSITE profilePS5007116.81161121IPR001356Homeobox domain
SMARTSM003894.4E-1962125IPR001356Homeobox domain
CDDcd000861.00E-1863122No hitNo description
PfamPF000462.8E-1764119IPR001356Homeobox domain
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PROSITE profilePS5084843.544248482IPR002913START domain
SuperFamilySSF559613.3E-33249481No hitNo description
CDDcd088755.37E-124252478No hitNo description
SMARTSM002341.1E-66257479IPR002913START domain
PfamPF018521.2E-54258479IPR002913START domain
Gene3DG3DSA:3.30.530.202.3E-5361479IPR023393START-like domain
SuperFamilySSF559617.22E-26500731No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MLQPSMFENH ILDHMTTSST HKTSDSTGRL LDDDFETKSG TETTMDAPSG DEQDPNATXP  60
RPKRKRYHRH TQRQIQEMEA FFKDCPHPDD KQRKELSREL GLEPLQVKFW FQNKRTQMKA  120
QHERHENSIL KSENDKLRAE NNRYKEALAN ATCPNCGGPA AIGEMSFDEQ HLRIENARLH  180
EEIDKISSIA AKYVGKPLTS SFSSHMPSHV PSGRSLDLGV GSFGTQPGFV GEMYGSSTDL  240
LRSVSVLTEA DKPMIVELAV AAMEELIRMA EAGDPLWXPG DHNSIHQEIL NEDEYLRTFP  300
RGIGPKPLGL KSEASRETAL VIMNHVNLVE ILMDVNQWST VFCGIVSRAM TLDILSTGVA  360
GNYNGALQVM TAEFQVPSPL VPTRENYFVR YCKQNVDGTW AVVDVSLXNL RQSPVSRSRR  420
RPSGCLIQEL QNGYSKVIWV EHVEVDDSAV HNIYRPLVNS GLAFGAKRWV ATLDRQCQRL  480
ASSMASNIPA GELCVITSAE GRKSMLKLAQ RLVMSFCTGV GASTAHAWTT LSATGSDDVR  540
VMTRKSMDDP GRPPGIVLSA ATSFWIPVPP KRVFDFLRDE NSRSEWDILS NGGLVQEMAH  600
IANGRDPGNC VSLLRVNSAN SSQSNMLILQ ESCTDSTGSY VIYAPVDIVA MNVVLSGGDP  660
DYVALLPSGF AILPDGPAGS AGGGTLDVGS GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN  720
NLIKCTVERI RAAVTCEQNP *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the layer 1 (L1) of shoot meristems. {ECO:0000269|PubMed:12505995}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008384034.20.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_028943413.10.0homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A498IV160.0A0A498IV16_MALDO; Uncharacterized protein
STRINGXP_008384034.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]