PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000763092
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 731aa    MW: 81359.2 Da    PI: 5.7776
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000763092genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07128150427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                    ++C ff++ G+C  GdrC F+Hgp
  MDP0000763092 128 VPCIFFQK-GQCLKGDRCAFSHGP 150
                    69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8033059IPR000571Zinc finger, CCCH-type
PfamPF156638.2E-113185No hitNo description
SMARTSM003560.00183158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.2686187IPR000571Zinc finger, CCCH-type
SMARTSM003560.766386IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422124151IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6124150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5125149IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-5128150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4129150IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MVVGAQPQQQ QQLQQKPPQQ PETSAEEEAL KRNTDCVYFL ASPLTCKKGS ECEYRHSEYA  60
RVNPRDCWYW LNGSCLNLKC AFRHPPLDGL LGSPAANSAG PSLPLSHPVA TSTTPAIHAA  120
YNPSKQAVPC IFFQKGQCLK GDRCAFSHGP NPMASSKVLQ APAAAHGTEP SGLKKAFGGL  180
QKCTQELKVP MVSAMKSVGL PPEAKPAPKI PTAPIRNGVS IERNVSSTKA LDDEALRYKA  240
TSVPPVINGG STSQANHLLQ AHVSDDHGFQ NGKDADEHLR ESSPGFDVLV DDEHGDSDYY  300
HGEERFGRRR GHEGRNLNSV NEYDLDRPVD HTSMADVDRE RFCDPYDPYD RMQGQYAWDQ  360
HRVSSERQLV GPARLERRGY HKSESPENIA ELDLRHRLSK HRRVNGLRTI VSHDYAVDGH  420
VEERNNRPRR DSQQLPPHEG SCSSRLHGRI KIPGGSSPVN GSDLRQEREV DRARSRGRLS  480
PGRPQISSHQ GRLRDRIKGR VEEDYSNERR NFGASRVRGE IMDDRGDDFS RPKRLPELKV  540
VKDAENKEQS YLGKRKSVMD NYQQAEGDLS FEGPKPLSEI LRRKREAEAA ASGSRKSSAH  600
NKRGNNNQRE SRESDPGDSQ TAVTEVNNSL PTAAKEEPKL ATADAVGTED EKIDVVHGQS  660
SEGHEAEEGM IYEEENEIEG EDQREGEYDY EQGDEGDYNY EGENAEGEEE YLEEDEDGDD  720
FAKKIGVVFS *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.228231e-152fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028951387.10.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 17-like
TrEMBLA0A498HLM00.0A0A498HLM0_MALDO; Uncharacterized protein
STRINGXP_008340507.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137