PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000759612 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | NAC | ||||||||
Protein Properties | Length: 342aa MW: 39116.8 Da PI: 5.5424 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 58.5 | 2.2e-18 | 25 | 158 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiy.kvePwdLpkkvka...eekewyfFskrdkkyatgkrknr.atksgyWkat 86 +p GfrF Ptd++l++++L ++v +++ ++ ++ i e+d++ k+ Pw +++++ + +++yfF++ ++++ + r +r + + g+W+++ MDP0000759612 25 MPLGFRFXPTDQDLISFFLYHRVLHREslmayCNNFKLIYEFDLFgKTSPWVVWENFSGpclDGQDLYFFCQLKNRS--EARIKReIDAGGTWSES 118 699*********************99989888666789****986478*****7544444557789******98875..568888556689***88 PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++++ +g k+ L + k + + dW+++ey++ MDP0000759612 119 NSKLVKDLQNEKPIGKKRNLRYEK--EGCEHDGDWLLEEYSI 158 7754444458999*********84..4444589*******85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-20 | 17 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 22.567 | 25 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-14 | 26 | 158 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MEEEGYGGIV PMGFYENPLL GSNGMPLGFR FXPTDQDLIS FFLYHRVLHR ESLMAYCNNF 60 KLIYEFDLFG KTSPWVVWEN FSGPCLDGQD LYFFCQLKNR SEARIKREID AGGTWSESNS 120 KLVKDLQNEK PIGKKRNLRY EKEGCEHDGD WLLEEYSILP SVVGGADDSD HEIGKVVLCR 180 LKKNSRSGNK KNCSNSTQHV NEEWAKKRAR KEVKEKPVKK RARKEVKEKP VKKRARKEAN 240 EKPAKTKARN DVGSQNTTSM IAHTIDENNY KMISDATNDD QQCISNMDCS TMPANFSDHD 300 YVPISLVSEG GEPLLKDEDF LFENSEEMFF DLDDLFAPLD L* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008339049.2 | 0.0 | NAC domain-containing protein 41-like | ||||
TrEMBL | A0A498HU72 | 0.0 | A0A498HU72_MALDO; Uncharacterized protein | ||||
STRING | XP_008339049.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12591 | 6 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 5e-11 | NAC domain containing protein 94 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000759612 |