PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000759299
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 344aa    MW: 38172.6 Da    PI: 4.3615
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000759299genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-19122171154
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                    s y+GVr++k +g+W+AeIrd +     + +r++lg+f tae+A ka++a r+++e
  MDP0000759299 122 SPYRGVRQRK-WGKWAAEIRDpF-----KgARIWLGTFNTAEDASKAYEAKRLEIE 171
                    68*******9.**********55.....45***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.64E-17122170IPR016177DNA-binding domain
PROSITE profilePS5103219.177123184IPR001471AP2/ERF domain
SMARTSM003803.8E-17123186IPR001471AP2/ERF domain
PfamPF008474.4E-12124172IPR001471AP2/ERF domain
CDDcd000184.01E-23124165No hitNo description
PRINTSPR003671.9E-10124135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-22124171IPR001471AP2/ERF domain
PRINTSPR003671.9E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MPEPRRQLVN QRNSMRKSKR ELFPAQQSKI MRKVRIICYD PDATDDSSSS EDEGGRERSF  60
AKNPRRFVRE ITFCQPNVAL PPPKAAAEPE SSGQDSNYGG VKTLKPSNKK VIFTKSHRQS  120
SSPYRGVRQR KWGKWAAEIR DPFKGARIWL GTFNTAEDAS KAYEAKRLEI EEMVAAAPAA  180
VSASDKSNTT SASXVVSNNC SYNNVEPVLS EDSDCVLSQR SPSSVLDLET SASNNIQNGA  240
DLEKEIADDS TNLGELQIPD LGFLDDTXGP LHFDQEINLG PELDSLYLED FGQYFDDYSS  300
IEDIQIPGFE SDEPSSLPDC DFEDLGKDDI ACWLDEPLNI VCQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-15124164344ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.42401e-131fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008368213.20.0ethylene-responsive transcription factor ERF118-like
TrEMBLA0A498HKV90.0A0A498HKV9_MALDO; Uncharacterized protein
STRINGXP_008368213.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-32ERF family protein