PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000757476

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

WRKY

Protein Properties

Length: 45aa MW: 4930.78 Da PI: 10.0841

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000757476	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	64.8	1.4e-20	1	38	1	37
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+ MDP0000757476 1 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQ 38 58*************************99****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00774	1.6E-12	1	44	IPR003657	WRKY domain
PROSITE profile	PS50811	19.416	1	38	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-17	1	38	IPR003657	WRKY domain
Pfam	PF03106	5.9E-18	2	38	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	3.4E-18	2	38	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 45 aa Download sequence Send to blast
MNDGCQWRKY GQKIAKGNPC PRAYYRCTVA AGCPVRKQGL NLTI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM472769	1e-34	AM472769.2 Vitis vinifera contig VV78X277460.7, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008339282.3	4e-23	probable WRKY transcription factor 9
Refseq	XP_015943356.1	3e-23	probable WRKY transcription factor 9 isoform X1
Refseq	XP_015943357.1	3e-23	probable WRKY transcription factor 9 isoform X2
Refseq	XP_022017486.1	3e-23	probable WRKY transcription factor 9
Refseq	XP_025622409.1	3e-23	probable WRKY transcription factor 9
Swissprot	Q8VWV6	2e-23	WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBL	A0A0E0DWS8	6e-22	A0A0E0DWS8_9ORYZ; Uncharacterized protein
STRING	OMERI06G03240.1	1e-22	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	7e-26	WRKY DNA-binding protein 61

Link Out ? help Back to Top
Phytozome	MDP0000757476

Publications ? help Back to Top
Gao R,Liu P,Yong Y,Wong SM Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana. Sci Rep, 2016. 6: p. 24604 [PMID:27086702]