PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000756341 | ||||||||
Common Name | AP2D42, LOC103455948 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 161aa MW: 17967 Da PI: 9.6282 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 2.9e-17 | 32 | 81 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g MDP0000756341 32 QYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPMAAARAYDTAVFYLRG 81 7******99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-30 | 31 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.39E-27 | 31 | 91 | No hit | No description |
SuperFamily | SSF54171 | 4.38E-21 | 32 | 90 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-36 | 32 | 95 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-10 | 32 | 81 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.418 | 32 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-12 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-12 | 71 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MEGDYCCSSS SSSSTSTSME KRKHPDHRQE KQYRGIRMRK WGKWVAEIRE PNKRSRIWLG 60 SYTTPMAAAR AYDTAVFYLR GPSARLNFPE LVFQDDGQQL HDMSAASIRK KATEVGAKVD 120 AVQTALRSSP TSQSKTTLSR GGSLKPDLNE YPDPENSDES * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-16 | 31 | 92 | 4 | 66 | ATERF1 |
3gcc_A | 6e-16 | 31 | 92 | 4 | 66 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.15466 | 0.0 | fruit| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU732466 | 0.0 | GU732466.1 Malus x domestica AP2 domain class transcription factor (AP2D42) mRNA, complete cds. | |||
GenBank | JF412352 | 0.0 | JF412352.1 Malus x domestica ethylene response factor 5 mRNA, complete cds. | |||
GenBank | JQ655768 | 0.0 | JQ655768.1 Malus sieversii dehydration-responsive element binding protein (DREBA5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001288046.1 | 1e-117 | ethylene-responsive transcription factor ERF011-like | ||||
Swissprot | O22174 | 8e-52 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | D5L126 | 1e-116 | D5L126_MALDO; AP2 domain class transcription factor | ||||
TrEMBL | I6U574 | 1e-116 | I6U574_9ROSA; Dehydration-responsive element binding protein | ||||
STRING | XP_008393783.1 | 1e-117 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 1e-53 | DREB and EAR motif protein 3 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000756341 |
Entrez Gene | 103455948 |
Publications ? help Back to Top | |||
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