PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000755622
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 333aa    MW: 37232.9 Da    PI: 7.0504
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000755622genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.8e-20191242256
            AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                    +y+GVr+++ +g+++AeIrdp   + +  r++lg+f ta eAa+a+++a+ kl+g+
  MDP0000755622 191 HYRGVRQRP-WGKYAAEIRDP---NrRGSRVWLGTFNTAIEAARAYDRAAFKLRGA 242
                    8********.**********9...4334**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.42E-30190249No hitNo description
Gene3DG3DSA:3.30.730.101.5E-32190250IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-23191250IPR016177DNA-binding domain
PROSITE profilePS5103224.184191249IPR001471AP2/ERF domain
PfamPF008475.0E-14191241IPR001471AP2/ERF domain
SMARTSM003801.0E-35191255IPR001471AP2/ERF domain
PRINTSPR003671.8E-13192203IPR001471AP2/ERF domain
PRINTSPR003671.8E-13231251IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MALDQVSALE LIKHHLLGEF SPVKSCATEP XDXGSSFTQN QWSPEDNSDL SRSQSESFCS  60
KSSSTFXSSX EISDYLDSSD IFEFNSAGFF DFXEKPQAID LTTPKSXNLS SQNSFEFDSK  120
PLVSXDYFEF EQKPQILKQT DPKPANSIRX PALTISLPNK TEWIQFASSD QAAAKPATVX  180
KAISNEEKKK HYRGVRQRPW GKYAAEIRDP NRRGSRVWLG TFNTAIEAAR AYDRAAFKLR  240
GAKAILNFPL EAGKAEPVXS VEXKRRRQEH REDAKVVVAV KKEKLTETPL TPSXWMAFWD  300
SEKEDVKGVF NVPPLSPLSP HPAVGCPQLM VV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-29188256270ATERF1
3gcc_A3e-29188256270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008369419.20.0ethylene-responsive transcription factor 5-like
SwissprotO803415e-68EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A498JN730.0A0A498JN73_MALDO; Uncharacterized protein
STRINGXP_008355567.11e-164(Malus domestica)
STRINGXP_008369419.11e-164(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-57ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]