PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000755474
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 290aa    MW: 33252.2 Da    PI: 7.4315
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000755474genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.23.3e-09107127626
                    -SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                    C+ f+rtG+C  Gd+C FaHg
  MDP0000755474 107 CPAFRRTGHCXKGDSCEFAHG 127
                    ********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.737101129IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5101128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6102132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-7106130IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-7106127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-6134167IPR000571Zinc finger, CCCH-type
SMARTSM003560.73137162IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.709137163IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MMQGVYPGYY YLLAEPNVCY SGLFGSPVQY HEPMIPVLYR YQCQCQYHDP MIDNAIFGSD  60
EFRMYGYKVK RCPRMRAHDW TECPYAHRGG KAQRRDPRKY AYVAIVCPAF RRTGHCXKGD  120
SCEFAHGVFE YWLHPAKYRT SACNILINGY CPRKVCFFAH SPDQLRPEHN KQVIILPTST  180
NSNNDNYDHV YRASPRTPKA NLGGGGVEVK APLTVEENQT MMNNKKIVDE SRLKVEEFLN  240
NLRALRLSDY EMEYDQGEID AACGMKSYGG GEASVSEMPX FDWITELLQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017180395.20.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 54
TrEMBLA0A498KLL90.0A0A498KLL9_MALDO; Uncharacterized protein
STRINGXP_008375795.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141721011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.15e-64C3H family protein