PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000755474 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 290aa MW: 33252.2 Da PI: 7.4315 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.2 | 3.3e-09 | 107 | 127 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+rtG+C Gd+C FaHg MDP0000755474 107 CPAFRRTGHCXKGDSCEFAHG 127 ********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.737 | 101 | 129 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 101 | 128 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 102 | 132 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-7 | 106 | 130 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-7 | 106 | 127 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.5E-6 | 134 | 167 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.73 | 137 | 162 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.709 | 137 | 163 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MMQGVYPGYY YLLAEPNVCY SGLFGSPVQY HEPMIPVLYR YQCQCQYHDP MIDNAIFGSD 60 EFRMYGYKVK RCPRMRAHDW TECPYAHRGG KAQRRDPRKY AYVAIVCPAF RRTGHCXKGD 120 SCEFAHGVFE YWLHPAKYRT SACNILINGY CPRKVCFFAH SPDQLRPEHN KQVIILPTST 180 NSNNDNYDHV YRASPRTPKA NLGGGGVEVK APLTVEENQT MMNNKKIVDE SRLKVEEFLN 240 NLRALRLSDY EMEYDQGEID AACGMKSYGG GEASVSEMPX FDWITELLQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017180395.2 | 0.0 | LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 54 | ||||
TrEMBL | A0A498KLL9 | 0.0 | A0A498KLL9_MALDO; Uncharacterized protein | ||||
STRING | XP_008375795.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14172 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07500.1 | 5e-64 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000755474 |