PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000753623 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 140aa MW: 15798.4 Da PI: 8.1231 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 40.4 | 8.5e-13 | 20 | 86 | 1 | 61 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeere.damssl 61 +C+ C+vlr++C++ C+l+ ++ p++q + + +++k+F+ + +l+++ +pe++r+ a++s+ MDP0000753623 20 SCNXCRVLRKGCSDTCILRSCLywidsPEAQGNXTLFLAKFFSHNDLLSFVXVVPENQRPvSAVRSV 86 6*********************************************************851566665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 1.4E-9 | 20 | 85 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MQQDMHTEVV PVLDRMVEMS CNXCRVLRKG CSDTCILRSC LYWIDSPEAQ GNXTLFLAKF 60 FSHNDLLSFV XVVPENQRPV SAVRSVRPHG EPGERSGGAS VEWELARVPV GGRYGAVQRR 120 FEAITGFYYA CLRRVFERV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.23857 | 5e-77 | root |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A498KND7 | 2e-83 | A0A498KND7_MALDO; Uncharacterized protein | ||||
STRING | XP_008363136.1 | 4e-50 | (Malus domestica) | ||||
STRING | XP_008373879.1 | 4e-50 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 7e-25 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000753623 |