PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000750392
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ARF
Protein Properties Length: 842aa    MW: 92815.1 Da    PI: 7.7072
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000750392genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-23256357199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++k+iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + ++
  MDP0000750392 256 FAKTLTQSDANNGGGFSVPRYCAETIfprldysANPPVQ--TILAKDVHGETWKFKHIYRGTPRRHLLTTGWSTFVNHKKLVSGDSIVFL--RAEN 347
                    89****************************996545444..899**********************************************..4488 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    + l+v+++r+
  MDP0000750392 348 GDLCVGIRRA 357
                    999****996 PP
2Auxin_resp114.41.1e-37425508183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                    aa+ a+++++FevvY+Prast+eF+vk++ v++al++++++GmRfkmafetedss++++ +Gt+++v+ ++p+rWp+S+Wr+L+
  MDP0000750392 425 AATLAANGQPFEVVYYPRASTPEFCVKASLVKAALQIRWCPGMRFKMAFETEDSSRISWfMGTISSVQVAEPLRWPESPWRLLQ 508
                    68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-37250365IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-28252362IPR015300DNA-binding pseudobarrel domain
CDDcd100173.29E-20255356No hitNo description
PfamPF023622.1E-21256357IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084256358IPR003340B3 DNA binding domain
SMARTSM010199.4E-21256358IPR003340B3 DNA binding domain
PfamPF065071.2E-32425508IPR010525Auxin response factor
PROSITE profilePS5174513.495750829IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MREGHTPNXK KXDRRHAWRQ PDVTPLGLKG WQSPTSLVLG LPPSLGLPNV GAKPTDPRAL  60
SSGLSPEQGP TVDSYMRIFD ADDSPSSFPS EAFSSVNFXA AGEELRALDF RRTWKVVPRP  120
SPQIFNFSPT AELLRARGIG ISRRKLKEGD RCLDPQLWHA CAGGMVQMPP VNAKVFYFPQ  180
GHAEHACGPV DFRNCPRVSP YILCRVAAIR FMADPETDEV YAKIRLVPLN GVEAGYEDDG  240
IGGLNGSETP DKPASFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYSAN PPVQTILAKD  300
VHGETWKFKH IYRGTPRRHL LTTGWSTFVN HKKLVSGDSI VFLRAENGDL CVGIRRAKRG  360
SGSGPESSSG WNPMGGNCTV PYGGFSAFLR EDENNLMRNG NGNISNSNGS LVGKGKVGPE  420
SVSEAATLAA NGQPFEVVYY PRASTPEFCV KASLVKAALQ IRWCPGMRFK MAFETEDSSR  480
ISWFMGTISS VQVAEPLRWP ESPWRLLQVT WDEPDLLQNV KRVSPWLVEL VSNMPAIHLT  540
PFSLPRKKMR LPQYPDFPFE GQLPMPTFSG NLLGPSSPFG CLPDKTPAGM QGARHAHYGL  600
SLSDMHLNKL HTDLFPAGFP PLXHAAAPTK FTNNMVIHKP TISENVSCLL TMSHFTPTSK  660
KPDDVKPPQL ILFGQPILTE QQISLSSSGD TVSPVLTGNS LSDGNADRMV NHSDNSGSAL  720
HRQSIQERSS CEGFQWYKDT RNETELSLET GHCKVFMESE DVGRTLDLSL LGSYDELYRK  780
LADMFDIDNS ETLNHVLYRD GTGAVKHIGE EPFRYGQFPL NRVMAPKDRG PCPFNYQMSG  840
W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-7815352951388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.15460.0fruit| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1774220.0FJ177422.1 Malus x domestica putative auxin response factor ARF16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008355620.20.0auxin response factor 18-like isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A498JZD70.0A0A498JZD7_MALDO; Auxin response factor
STRINGXP_008355620.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]