PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000747679

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 289aa MW: 31405.5 Da PI: 8.1087

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000747679	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.5	4.8e-29	66	167	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C++ C+l+ ++ p++q +++ +++k+FG+s +l++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q++ MDP0000747679 66 SCNGCRVLRKGCSDTCILRSCLcwidsPEAQGNATLFLAKFFGRSDLLSFVSAVPENQRPTLFQSLLFEACGRTVNPVNGAVGLLSSGNWHVCQSA 161 6*******************9999999****************************************************************9 PP DUF260 92 aelall 97 ++++l MDP0000747679 162 VDTVLS 167 998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.767	65	171	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-24	66	163	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MLNQRQKPDQ TPRSDGQIGS EIVAETRSRS VSPRVWKICL DKXVVGPHPM STVICKMEAD 60 RTVEMSCNGC RVLRKGCSDT CILRSCLCWI DSPEAQGNAT LFLAKFFGRS DLLSFVSAVP 120 ENQRPTLFQS LLFEACGRTV NPVNGAVGLL SSGNWHVCQS AVDTVLSGGA LRPLPAFTTP 180 ALDESSDAFS RGACTPKNRY CPSAAAYYDA ERIQPFEAAG LSLRPNLVAA ERGRGKGMWI 240 CVSAAMDQRR RDTVSFDSEE SVMTTTTTRT FESGGGDLKD RKLLNLFV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.23857	1e-113	root

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008377972.1	1e-164	LOB domain-containing protein 37-like
TrEMBL	A0A498J9U7	1e-163	A0A498J9U7_MALDO; Uncharacterized protein
STRING	XP_008365099.1	1e-164	(Malus domestica)
STRING	XP_008377972.1	1e-164	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-61	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	MDP0000747679