PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000742467

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

BES1

Protein Properties

Length: 633aa MW: 69628 Da PI: 8.2639

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000742467	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	135.7	4.7e-42	77	215	1	133
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.kgskpl..eeaeaagssas...asp 90 gg++r ++++E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V+ AL+reAGwvv +DGtt++ k++ p ++aa++s+s +sp MDP0000742467 77 GGARRCRPMEEKERTKLRERQRRAITARILAGLRRHGNYNLRVRADINDVVXALAREAGWVVLPDGTTFPsKSQGPRlaGVNSAAVTSSSsqiVSP 172 6899***************************************************************955555557733444444444124677 PP DUF822 91 esslqsslkssalaspvesysaspksssfpspssldsislasa 133 ++ ++ ++s +sp e + +k + ps s +d s+a + MDP0000742467 173 RTPAXLKGVTSGYQSPGELNAXNTKGVYLPSLSPYDLPSSARS 215 777778888999*******************9998877654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.2E-37	79	205	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	7.11E-65	244	453	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	2.5E-39	245	366	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	1.3E-12	259	367	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	7.5E-8	272	286	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	7.5E-8	293	311	IPR001554	Glycoside hydrolase, family 14
Gene3D	G3DSA:3.20.20.80	7.3E-33	367	457	IPR013781	Glycoside hydrolase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence Send to blast
MEKGLQKLIT SEEDDDEEME MDVKEEDDDD DEDGEKDVDA SQXMAGVDGE MPTISNNNNR 60 LQQXHQFQEQ VGTXGGGGAR RCRPMEEKER TKLRERQRRA ITARILAGLR RHGNYNLRVR 120 ADINDVVXAL AREAGWVVLP DGTTFPSKSQ GPRLAGVNSA AVTSSSSQIV SPRTPAXLKG 180 VTSGYQSPGE LNAXNTKGVY LPSLSPYDLP SSARSQXSSI VGDGAGQTES XPLIGGSMDN 240 VGNKQLGVIN MKCELVDPDG LLKQLRVLKS VNVDGVMVNC WWGIVEGHXP QEYNWNGYKR 300 LFQMVRELKL KLQXMLVMMY VFHCLIGRXN PDIFFTDREG RXNPECLSWG IDKKRVLRGR 360 TAVECYDQYL XKSLRKATEA RGHSFWGRGP DNAGSYNSGP NETGFFSDGG XYDGYYGRFF 420 LNWYSRVLVD HGDRVLSLAK LAFDGTCIAA RIQNGTVLIS SSIPYXESAT PAGXLLQSDD 480 NGFLVVQRED RDSFAEALSG SLGLXGAQFD TPKSRAHDLP KSRLSARATR ATTHAQTVRR 540 TLTRILHPTR LVRASKPPNT LAPRTRGNPP SVSAPSSHAR TLLLPHPSPA RPDPPVSDPL 600 PPASPSEPLP TPRETTPYYL FPAAGKFGHG FR*

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence Send to blast

MEKGLQKLIT SEEDDDEEME MDVKEEDDDD DEDGEKDVDA SQXMAGVDGE MPTISNNNNR  60
LQQXHQFQEQ VGTXGGGGAR RCRPMEEKER TKLRERQRRA ITARILAGLR RHGNYNLRVR  120
ADINDVVXAL AREAGWVVLP DGTTFPSKSQ GPRLAGVNSA AVTSSSSQIV SPRTPAXLKG  180
VTSGYQSPGE LNAXNTKGVY LPSLSPYDLP SSARSQXSSI VGDGAGQTES XPLIGGSMDN  240
VGNKQLGVIN MKCELVDPDG LLKQLRVLKS VNVDGVMVNC WWGIVEGHXP QEYNWNGYKR  300
LFQMVRELKL KLQXMLVMMY VFHCLIGRXN PDIFFTDREG RXNPECLSWG IDKKRVLRGR  360
TAVECYDQYL XKSLRKATEA RGHSFWGRGP DNAGSYNSGP NETGFFSDGG XYDGYYGRFF  420
LNWYSRVLVD HGDRVLSLAK LAFDGTCIAA RIQNGTVLIS SSIPYXESAT PAGXLLQSDD  480
NGFLVVQRED RDSFAEALSG SLGLXGAQFD TPKSRAHDLP KSRLSARATR ATTHAQTVRR  540
TLTRILHPTR LVRASKPPNT LAPRTRGNPP SVSAPSSHAR TLLLPHPSPA RPDPPVSDPL  600
PPASPSEPLP TPRETTPYYL FPAAGKFGHG FR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1bfn_A	1e-38	246	488	20	330	BETA-AMYLASE
1q6c_A	1e-38	246	488	20	330	beta-amylase
1q6g_A	1e-38	246	488	20	330	beta-amylase
1uko_A	1e-38	246	488	20	330	Beta-amylase
1uko_B	1e-38	246	488	20	330	Beta-amylase
1uko_C	1e-38	246	488	20	330	Beta-amylase
1uko_D	1e-38	246	488	20	330	Beta-amylase
1ukp_A	1e-38	246	488	20	330	Beta-amylase
1ukp_B	1e-38	246	488	20	330	Beta-amylase
1ukp_C	1e-38	246	488	20	330	Beta-amylase
1ukp_D	1e-38	246	488	20	330	Beta-amylase
1v3h_A	1e-38	246	488	20	330	Beta-amylase
1v3i_A	1e-38	246	488	20	330	Beta-amylase
1wdp_A	1e-38	246	488	20	330	Beta-amylase
1wdq_A	1e-38	246	488	20	330	Beta-amylase
1wdr_A	1e-38	246	488	20	330	Beta-amylase
1wds_A	1e-38	246	488	20	330	Beta-amylase
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.14957	1e-77	bud\| fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009340422.1	0.0	PREDICTED: LOW QUALITY PROTEIN: beta-amylase 7
Swissprot	O80831	1e-139	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A498KK02	0.0	A0A498KK02_MALDO; Beta-amylase
STRING	XP_009340422.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF19853	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	1e-114	beta-amylase 7

Link Out ? help Back to Top
Phytozome	MDP0000742467

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]