PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000739900
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GATA
Protein Properties Length: 358aa    MW: 39063.5 Da    PI: 9.2854
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000739900genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.8e-18218251134
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                    Cs C+t++TplWR+gp+g+k+LCnaCG+++rk +
  MDP0000739900 218 CSDCNTSTTPLWRSGPRGPKSLCNACGIRQRKAR 251
                    *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.651212248IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-18212263IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.47E-12215251No hitNo description
Gene3DG3DSA:3.30.50.103.8E-15216251IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.08E-12217247No hitNo description
PROSITE patternPS003440218243IPR000679Zinc finger, GATA-type
PfamPF003202.2E-16218251IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MTPVYLNPQS SPFFHVEQAN DQDQRLKLFI SSSYHNQAAA SSCSSLISSF PTFLDSFEDQ  60
RAGSSTTTTH GHGQDHSLQY HHKTDNHTWD CGTSTHDQAS SPSSLVQPHV VDVISTKDLR  120
LMSAYADHER EINGRGGEVG KSNNNIRPRA VKWMSSKMRL MQKMTNPDLA LAGTTKNYVL  180
AAAEITEHKF QVVQYQENSD ETSFSRNSNN TTPDVRVCSD CNTSTTPLWR SGPRGPKSLC  240
NACGIRQRKA RRAMAEAAAA AANGFVVGAT DTSSAKGKVA NKEKKPRGSH STNVTRCKNK  300
SKLIVTDNAS VSPNNKINSN NNKICFKGLG FQRVFPQDVA EAAILLMELS CGLINHS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393645.10.0putative GATA transcription factor 22
TrEMBLA0A498HTZ60.0A0A498HTZ6_MALDO; Uncharacterized protein
STRINGXP_008393645.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.16e-21cytokinin-responsive gata factor 1