PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000738604 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 337aa MW: 38967 Da PI: 8.5415 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59 | 7.9e-19 | 39 | 92 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++qle Le+ F ++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k MDP0000738604 39 KKKRLTSDQLESLERSFLEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 92 56679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.7 | 6.3e-38 | 39 | 128 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kk+rl+++q+++LE+sF ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y+aLk++yd +++e+++L++ev +L++ l MDP0000738604 39 KKKRLTSDQLESLERSFLEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLEHLYDALKQEYDVVSKEKHKLQEEVMKLKTIL 128 9****************9999*****************************************************************9766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.85E-19 | 20 | 96 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.973 | 34 | 94 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-17 | 36 | 98 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.08E-15 | 39 | 95 | No hit | No description |
Pfam | PF00046 | 3.2E-16 | 39 | 92 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-20 | 41 | 101 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.4E-5 | 65 | 74 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 69 | 92 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.4E-5 | 74 | 90 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.8E-7 | 94 | 128 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MEMKHQAMIS ETSSQGGLVP GMXDRNNHQS SYGCSSQDKK KRLTSDQLES LERSFLEEIK 60 LDPDRKMKLS RELGLQPRQI AVWFQNRRAR WKAKQLEHLY DALKQEYDVV SKEKHKLQEE 120 VMKLKTILRD EVARKQVSTG YTEISGEETV ESTSVSIRSA NKARGTNQHK IAEYNYLYNV 180 EEYNPFMTHP DPYDTPQPGM STRTPNRAVL ADTWKLINTL KCYDYVKTVR IIAGHLRVET 240 TYSDLYDKIV HLPWIQGERK VREGSVLVVV IEGKCFRNEW ILDEGSSDPW VVLRENRDET 300 SSIKAIIGCW DIMVMFKGDE RLKKARNLDG KPSENT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 86 | 94 | RRARWKAKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB545981 | 2e-35 | AB545981.1 Pyrus pyrifolia genes for F-box proteins, S ribonuclease, complete cds, haplotype: S4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008387471.2 | 1e-130 | putative homeobox-leucine zipper protein ATHB-51 isoform X2 | ||||
TrEMBL | A0A498ICZ7 | 1e-127 | A0A498ICZ7_MALDO; Uncharacterized protein | ||||
STRING | XP_008350329.1 | 1e-128 | (Malus domestica) | ||||
STRING | XP_008387470.1 | 1e-128 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 4e-48 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000738604 |