PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000738604
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 337aa    MW: 38967 Da    PI: 8.5415
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000738604genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.9e-193992356
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   k+ ++t++qle Le+ F ++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
  MDP0000738604 39 KKKRLTSDQLESLERSFLEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 92
                   56679************************************************9 PP

2HD-ZIP_I/II117.76.3e-3839128291
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    kk+rl+++q+++LE+sF ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y+aLk++yd +++e+++L++ev +L++ l
  MDP0000738604  39 KKKRLTSDQLESLERSFLEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLEHLYDALKQEYDVVSKEKHKLQEEVMKLKTIL 128
                    9****************9999*****************************************************************9766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.85E-192096IPR009057Homeodomain-like
PROSITE profilePS5007116.9733494IPR001356Homeobox domain
SMARTSM003892.5E-173698IPR001356Homeobox domain
CDDcd000863.08E-153995No hitNo description
PfamPF000463.2E-163992IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-2041101IPR009057Homeodomain-like
PRINTSPR000317.4E-56574IPR000047Helix-turn-helix motif
PROSITE patternPS0002706992IPR017970Homeobox, conserved site
PRINTSPR000317.4E-57490IPR000047Helix-turn-helix motif
PfamPF021833.8E-794128IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEMKHQAMIS ETSSQGGLVP GMXDRNNHQS SYGCSSQDKK KRLTSDQLES LERSFLEEIK  60
LDPDRKMKLS RELGLQPRQI AVWFQNRRAR WKAKQLEHLY DALKQEYDVV SKEKHKLQEE  120
VMKLKTILRD EVARKQVSTG YTEISGEETV ESTSVSIRSA NKARGTNQHK IAEYNYLYNV  180
EEYNPFMTHP DPYDTPQPGM STRTPNRAVL ADTWKLINTL KCYDYVKTVR IIAGHLRVET  240
TYSDLYDKIV HLPWIQGERK VREGSVLVVV IEGKCFRNEW ILDEGSSDPW VVLRENRDET  300
SSIKAIIGCW DIMVMFKGDE RLKKARNLDG KPSENT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18694RRARWKAKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5459812e-35AB545981.1 Pyrus pyrifolia genes for F-box proteins, S ribonuclease, complete cds, haplotype: S4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008387471.21e-130putative homeobox-leucine zipper protein ATHB-51 isoform X2
TrEMBLA0A498ICZ71e-127A0A498ICZ7_MALDO; Uncharacterized protein
STRINGXP_008350329.11e-128(Malus domestica)
STRINGXP_008387470.11e-128(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.14e-48homeobox 51