PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000730994
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 231aa    MW: 26129.6 Da    PI: 7.2223
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000730994genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-1891145256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    rk+ ++t+eq + Lee F++++++++ +++ LA++l+L+ rqV vWFqNrRa+ k
  MDP0000730994  91 RKKLRLTEEQSTLLEESFNRHSTLNQVQKQSLAEQLNLKPRQVEVWFQNRRARTK 145
                    678899***********************************************98 PP

2HD-ZIP_I/II118.15e-3891179189
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                    +kk+rl++eq++lLEesF+++++L++ +K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL++
  MDP0000730994  91 RKKLRLTEEQSTLLEESFNRHSTLNQVQKQSLAEQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCESLSDENRRLKKELQELKS 179
                    69*************************************************************************************93 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.01E-1877148IPR009057Homeodomain-like
PROSITE profilePS5007117.36287147IPR001356Homeobox domain
SMARTSM003897.7E-1589151IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-1791145IPR009057Homeodomain-like
PfamPF000461.1E-1591145IPR001356Homeobox domain
CDDcd000861.78E-1591148No hitNo description
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
SMARTSM003401.4E-18147192IPR003106Leucine zipper, homeobox-associated
PfamPF021834.1E-10147180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGDVEEACNT KLQLGLGVCE YASRQEKKDN PLVCLDLSFA LCPKQEVPNL DDHIANGSSV  60
RTMDVDEESY ERSIDHTNNK SVIMNNKNGV RKKLRLTEEQ STLLEESFNR HSTLNQVQKQ  120
SLAEQLNLKP RQVEVWFQNR RARTKLKQTE VDCEFLKKCC ESLSDENRRL KKELQELKSL  180
NANGTSPLYI QKATMPPVCL SCEKMVKAQE NNPAAATNAE DLNVVRKSSN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008390670.21e-169homeobox-leucine zipper protein HAT22-like
SwissprotP466651e-47HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A498HPF71e-167A0A498HPF7_MALDO; Uncharacterized protein
STRINGXP_009342828.11e-160(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.18e-42homeobox from Arabidopsis thaliana