PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000730019

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

SBP

Protein Properties

Length: 608aa MW: 67710.8 Da PI: 6.8704

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000730019	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	26.4	1.8e-08	1	29	9	37
---TT--HHHHHTT--HHHHT-S-EEETT CS SBP 9 adlseakeyhrrhkvCevhskapvvlvsg 37 +dl+ k+yh+rh+vC++hsk +vv+v+ MDP0000730019 1 MDLTFSKDYHKRHRVCDAHSKIAVVIVNA 29 59999********************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF103612	2.49E-6	2	28	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	3.3E-6	2	28	IPR004333	Transcription factor, SBP-box
Pfam	PF13359	1.1E-40	392	549	IPR027806	Harbinger transposase-derived nuclease domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence Send to blast
MDLTFSKDYH KRHRVCDAHS KIAVVIVNAA GAHGWMLQSV RHRLVGGGEC FNGSPSSTPP 60 ADISISTSSP PSSKFKFTQA FHQTPFIPPP KFRPFMEITP FPLLSQEDDS HFYTLLSDMD 120 EFDINGGNHT LKKRRKDDGN NHGGGAGAAP GAMSDILASL ILLDEEEKLE QESYLVEAQQ 180 ERSMLEDNHR QKTRAMEEYY SDIQQHHSQS DESDLSRAKR SRQSASAAAA AAAEASAAGP 240 DPSSSAMIPG PHRRLWVKDR PKVWWENLGR PDVSEEEFRK AFRMSKGTFD MICAELESAV 300 FKKNTMLREA IPVRQRVAVC IYRLATGEPL REVSRRFGLG ISTCHKLVLE VCVAIKTVLM 360 HKFLQWPDEG RMQEIKEEFE ATSGIPNVAG SMYTTHISII APKVNVAAYF NKRHTERNQK 420 TSYSVTVQGI VDPRGVFTDV CIGWPGSMPD DQVLEKSALF QRANRGLLKD VWVVGNAGFP 480 LMDWVLVPYT HQNLTWTQHA FNEKIGEVEG VAKDAFAKLK GRWSCLQKRT EIKLQDLPVV 540 LGACCVLHNI CAMRNDELDP EFEFELFDDL ATPENSLRSA GSVQARDHIA HNLLHHGLAA 600 GTGSGFL*

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence Send to blast

MDLTFSKDYH KRHRVCDAHS KIAVVIVNAA GAHGWMLQSV RHRLVGGGEC FNGSPSSTPP  60
ADISISTSSP PSSKFKFTQA FHQTPFIPPP KFRPFMEITP FPLLSQEDDS HFYTLLSDMD  120
EFDINGGNHT LKKRRKDDGN NHGGGAGAAP GAMSDILASL ILLDEEEKLE QESYLVEAQQ  180
ERSMLEDNHR QKTRAMEEYY SDIQQHHSQS DESDLSRAKR SRQSASAAAA AAAEASAAGP  240
DPSSSAMIPG PHRRLWVKDR PKVWWENLGR PDVSEEEFRK AFRMSKGTFD MICAELESAV  300
FKKNTMLREA IPVRQRVAVC IYRLATGEPL REVSRRFGLG ISTCHKLVLE VCVAIKTVLM  360
HKFLQWPDEG RMQEIKEEFE ATSGIPNVAG SMYTTHISII APKVNVAAYF NKRHTERNQK  420
TSYSVTVQGI VDPRGVFTDV CIGWPGSMPD DQVLEKSALF QRANRGLLKD VWVVGNAGFP  480
LMDWVLVPYT HQNLTWTQHA FNEKIGEVEG VAKDAFAKLK GRWSCLQKRT EIKLQDLPVV  540
LGACCVLHNI CAMRNDELDP EFEFELFDDL ATPENSLRSA GSVQARDHIA HNLLHHGLAA  600
GTGSGFL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	135	KKRRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.2614	0.0	bud\| flower\| fruit\| leaf\| root\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008352375.1	0.0	protein ALP1-like
TrEMBL	A0A314YRB3	0.0	A0A314YRB3_PRUYE; Protein ALP1-like
STRING	XP_008337734.1	0.0	(Malus domestica)
STRING	XP_008352375.1	0.0	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	4e-08	SBP family protein

Link Out ? help Back to Top
Phytozome	MDP0000730019