PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000727836
Common NameSCL1
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 580aa    MW: 64468 Da    PI: 4.7829
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000727836genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.21.3e-1372105792374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    ++lL+ecA a+s+g++e+a++++++l++++s +gdp+qR+aay++e+Laarla+s++ lyk+l+++e +   ss +laa+++++ev+P++kf++++
  MDP0000727836 210 KQLLFECAGALSEGNNEEASTMINELRQMVSIQGDPTQRIAAYMVEGLAARLASSGKFLYKSLKCKEPP---SSYRLAAMQILFEVCPCFKFGFMA 302
                    589*****************************************************************9...9*********************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    aN aI ea + e+rvHiiDfd++qG Q+++L+q+L+s p++pp+l++Tgv++pe++  +   l+ +g+rL+k+Ae+l+vpfef++ va+r++ ++ 
  MDP0000727836 303 ANGAIIEACKDEKRVHIIDFDVNQGNQYITLIQTLSSLPGKPPHLKLTGVDDPETVqrHVGGLNIIGQRLEKLAEALKVPFEFRA-VASRTSIVNS 397
                    ******************************************************99888999***********************.7********* PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    ++L +kpgEa++Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++F  rf+ea +yysa++dsl+a lpres++r++vEr
  MDP0000727836 398 SMLGCKPGEAVVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLRPKLVTVVEQDVNTNTTPFIPRFVEAYNYYSAVYDSLDAALPRESQDRMNVER 493
                    ************************************************************************************************ PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    ++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF++ p+s++++++++ l r+++++ y+v+ee g+l +gW++++L+++SaWr
  MDP0000727836 494 QCLARDIVNIVACEGEERIERYEVAGKWRARMTMAGFTSCPMSTSVTDSIRDLSRQYSDR-YKVKEEAGALHFGWEGKSLIVASAWR 579
                    *********************************************************966.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.823183560IPR005202Transcription factor GRAS
PfamPF035144.5E-135210579IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MSLVRPAELS TTSYRNRKLY SLNGSNDGSS LSTQIFGADE HKAVYVNDSY SSETYEKYFL  60
DSPMEEVTHP SSSGISGSST NPRGASYYQL TAGSVSSLNT QNPYITSLMS NFESDYLESQ  120
SPDADSFDED KMRLKLQELE RALLDDNDDD EDDGEKNCCS RSMEVEGEWI DPIQSELLHD  180
SPKESSSSDS NASSISIXKE ISHASPRTPK QLLFECAGAL SEGNNEEAST MINELRQMVS  240
IQGDPTQRIA AYMVEGLAAR LASSGKFLYK SLKCKEPPSS YRLAAMQILF EVCPCFKFGF  300
MAANGAIIEA CKDEKRVHII DFDVNQGNQY ITLIQTLSSL PGKPPHLKLT GVDDPETVQR  360
HVGGLNIIGQ RLEKLAEALK VPFEFRAVAS RTSIVNSSML GCKPGEAVVV NFAFQLHHMP  420
DESVSTVNQR DQLLRMVKSL RPKLVTVVEQ DVNTNTTPFI PRFVEAYNYY SAVYDSLDAA  480
LPRESQDRMN VERQCLARDI VNIVACEGEE RIERYEVAGK WRARMTMAGF TSCPMSTSVT  540
DSIRDLSRQY SDRYKVKEEA GALHFGWEGK SLIVASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-6521557825378Protein SCARECROW
5b3h_A5e-6521557824377Protein SCARECROW
5b3h_D5e-6521557824377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.10890.0fruit| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017186165.20.0scarecrow-like protein 1 isoform X1
RefseqXP_028964711.10.0scarecrow-like protein 1 isoform X1
RefseqXP_028964712.10.0scarecrow-like protein 1 isoform X1
RefseqXP_028964713.10.0scarecrow-like protein 1 isoform X1
RefseqXP_028964714.10.0scarecrow-like protein 1 isoform X1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLD9ZJB00.0D9ZJB0_MALDO; SCL domain class transcription factor
STRINGXP_008365807.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]