PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000727570
Common NameWRKY12
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 348aa    MW: 38454.1 Da    PI: 5.1455
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000727570genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.32.8e-27125186159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    ldDgy+WrKYGqK++ g+++pr+YYrCt++   gC ++k+v++s+ dp++++ tY+g H+++
  MDP0000727570 125 LDDGYSWRKYGQKNILGANHPRGYYRCTHRgtqGCVATKQVQKSDADPTTFVLTYRGVHTCN 186
                    59***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-27123187IPR003657WRKY domain
SMARTSM007745.3E-38125187IPR003657WRKY domain
SuperFamilySSF1182901.44E-24125187IPR003657WRKY domain
PROSITE profilePS5081122.917125188IPR003657WRKY domain
PfamPF031069.6E-25126185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEREQESLTS ELTQGKELAE QLMSHLHHSS SEEXRDFLIS KILFSYEKAL SLLTGSGDGS  60
DGESKHXTAR ETMLESPTSF GNSSPLSEIS DQDCKRKNVF KKTKTMPSWT EEVKVSSGTG  120
LDGGLDDGYS WRKYGQKNIL GANHPRGYYR CTHRGTQGCV ATKQVQKSDA DPTTFVLTYR  180
GVHTCNKASQ LARVKEGLKG NXNTTLEVKK AKQFXPEMSF SFGRAGLRVK TEHLDAREKD  240
IFSPFSFPST PIESEXVGEH IFCSTMMXNN LVDSYAPIFE SPPAXFESDY LAVSPCHMSS  300
FGLAHDVQTS ESDLTEIISA PTSVTNSPIG DFDFSIDDFE FPPDCLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-20125185868OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.6870.0bud| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1129080.0JX112908.1 Malus x domestica WRKY transcription factor 46 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280874.10.0probable WRKY transcription factor 46
TrEMBLD9ZJF10.0D9ZJF1_MALDO; WRKY domain class transcription factor
STRINGXP_008350310.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.19e-37WRKY family protein