PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000723762
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 339aa    MW: 38150.4 Da    PI: 6.8523
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000723762genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.84.2e-1033796128
            NAM  96 kgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                    +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  MDP0000723762   3 NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 37 
                    67899*********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.626156IPR003441NAC domain
SuperFamilySSF1019411.83E-12356IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MVNGKQKGCK KILVLYTNFG KNRKPEKTNW VMHQYHLGQH EEEKEGELVV SKIFYQTQPR  60
QCNWSDRASA TTGEGSSDIM ATXSRRDSGS GSCSSKEILP SHPHRDHDQI AATAAAAVAA  120
AAPISSYSGI DIHQLKSDHF SFAPFRKSFD EVGIGGEAST VREGLXSGTC EEIREHHQRS  180
VPVQPHHHHH HHISHELVSD HHEQQQQHEH QQQQQLHHHQ QIATAAAFHI SRPSHPISTI  240
ISPPPLHHTS IILDQDSYSR LMLQNENFQA QQQQQHPHHQ QHHKMGARSA SGLEELIMGC  300
TSSSSDIKEE SSMPNPQEPE WMKYSSFWPD PDNPDHHG*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981140.0KF198114.1 Malus hupehensis NAC domain protein (NAC16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028943696.10.0NAC domain-containing protein 75-like
SwissprotQ9M0F83e-83NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A498KJR10.0A0A498KJR1_MALDO; Uncharacterized protein
STRINGXP_009352580.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45203458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.13e-41NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]