PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000723277 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | NAC | ||||||||
Protein Properties | Length: 237aa MW: 27279 Da PI: 5.9483 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.6 | 2.2e-31 | 22 | 101 | 51 | 129 |
NAM 51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 +k + +ewyfFs rd+kyatg r+nrat++gyWkatgkd+ v++ +ge vg++ktLvfy++rap+g kt W+mhe+rle MDP0000723277 22 AKLNANEWYFFSFRDRKYATGFRTNRATSTGYWKATGKDRLVMEPgTGEIVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 101 344678**************************************988899***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.275 | 1 | 119 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.53E-39 | 22 | 119 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-15 | 27 | 100 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MQIMWAIFDH LMPPVMCKNQ VAKLNANEWY FFSFRDRKYA TGFRTNRATS TGYWKATGKD 60 RLVMEPGTGE IVGMRKTLVF YRNRAPNGIK TGWIMHEFRL ETPHMPPKED WVLCRVFYKG 120 KGAEDSTKLN PHDFMLETTP CTVPLNLVPP PPTYDQTMPC VYNQNHSQSN AFLNLLQLPH 180 QEKYTNSSVS ELNTKNDDEY GFLWDMNLEE GSFDNGVAPN LDEMGFQVDE NSMVLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-28 | 1 | 124 | 46 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-28 | 1 | 124 | 46 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-28 | 1 | 124 | 46 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-28 | 1 | 124 | 46 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-28 | 1 | 124 | 49 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-28 | 1 | 124 | 49 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-28 | 1 | 124 | 49 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-28 | 1 | 124 | 49 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-28 | 1 | 124 | 49 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-28 | 1 | 124 | 49 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-28 | 1 | 124 | 49 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-28 | 1 | 124 | 49 | 173 | NAC domain-containing protein 19 |
4dul_A | 1e-28 | 1 | 124 | 46 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-28 | 1 | 124 | 46 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF198122 | 0.0 | KF198122.1 Malus hupehensis NAC domain protein (NAC86) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028958429.1 | 1e-162 | NAC domain-containing protein 21/22-like | ||||
TrEMBL | A0A498JXQ4 | 1e-160 | A0A498JXQ4_MALDO; Uncharacterized protein | ||||
STRING | XP_009336141.1 | 1e-143 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4381 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-60 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000723277 |