PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000722139
Common NameHD5, LOC103424650, LOC103455848
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 398aa    MW: 44992.7 Da    PI: 6.3677
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000722139genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-093253592155
                    HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    k +yps++e+  LA+++gL+++q+ +WF N+R ++
  MDP0000722139 325 KWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 359
                    669*****************************885 PP
2ELK37.84.2e-13279300122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELK++LlrKYsgyL+sLkqE+s
  MDP0000722139 279 ELKNHLLRKYSGYLSSLKQELS 300
                    9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.3E-20130174IPR005540KNOX1
PfamPF037901.7E-21131173IPR005540KNOX1
SMARTSM012562.9E-28181232IPR005541KNOX2
PfamPF037915.9E-24185230IPR005541KNOX2
SMARTSM011883.5E-7279300IPR005539ELK domain
PROSITE profilePS5121311.296279299IPR005539ELK domain
PfamPF037892.8E-10279300IPR005539ELK domain
PROSITE profilePS5007112.957299362IPR001356Homeobox domain
SuperFamilySSF466891.75E-19300374IPR009057Homeodomain-like
SMARTSM003892.8E-13301366IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-27304365IPR009057Homeodomain-like
CDDcd000861.48E-11311363No hitNo description
PfamPF059201.2E-16319358IPR008422Homeobox KN domain
PROSITE patternPS000270337360IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEDYNNQMDH ESSGGRGNFL YASPNLGGNY GRAASDHQMG INTFHLQSSG GGGGGGSGDQ  60
CNFQSPGTHP INVKTEATTS QHGHQKFQYN NNNNSHLVSS SRGHQPVVHQ LQNNFDLLND  120
DHSLSSNEVE AIKAKIIAHP QYSNLLEAYM DCQRVGAPSD VVARLSVARQ EFEARQRSSG  180
TSRETSKDPE LDQFMEAYYD MLVKYREELT RPIQEAMDFM RRIETQLNML GNNNNAPPLR  240
IFSPSEDKCE GIGSSEEEQE NSGGETEVPE IDPRAEDREL KNHLLRKYSG YLSSLKQELS  300
KKKKKGKLPK DARQKLLSWW ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW  360
KPSEDMQFMV MDGLHPQNAA LYMDGHYIGD GHYRLGP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.29170.0bud| fruit| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed only in the stems.
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ719790.0Z71979.1 M.domestica mRNA for kn1-like protein (1791 bp).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280878.10.0homeobox protein knotted-1-like 2
SwissprotO041350.0KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLD9ZJ200.0D9ZJ20_MALDO; HD domain class transcription factor
STRINGXP_008360967.10.0(Malus domestica)
STRINGXP_008393674.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-126KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Watillon B,Kettmann R,Boxus P,Burny A
    Knotted1-like homeobox genes are expressed during apple tree (Malus domestica [L.] Borkh) growth and development.
    Plant Mol. Biol., 1997. 33(4): p. 757-63
    [PMID:9132068]