PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000721685
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 317aa    MW: 35174.8 Da    PI: 8.4163
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000721685genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07255299143
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      + +W+  Ed  l++a k ++++   +W++Ia+ ++ g++   c  r
    MDP0000721685 255 KESWSSTEDIALLNALKAFPKEvsmRWEKIAAAVP-GKSKAACMKR 299
                      578********************************.*******877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.011160213IPR001005SANT/Myb domain
PROSITE profilePS500904.426164197IPR017877Myb-like domain
PROSITE profilePS500907.584250299IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-7250300IPR009057Homeodomain-like
SuperFamilySSF466897.72E-10252303IPR009057Homeodomain-like
SMARTSM007173.1E-6254306IPR001005SANT/Myb domain
PfamPF002492.0E-6255299IPR001005SANT/Myb domain
CDDcd001673.66E-5257299No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEFLDEDARP RFLFQSKAVA SSAADPQPHY KNLSKPFIFF TILISFLLLG LAFFLQSEPY  60
QSLLIWAALA LLIGPFAPAP VTGGDIRVGH GPIXDFPEIA TQVEDESKKR VSQKRSKPRR  120
FDELGADSTP VPETISGSVR EKKRSEASEG NGNGSVVFGE ETEWVEEDVE FLKKLLLKHP  180
VGTLRRWEVI TESFQGKHKV ESVIKRAKEL GEKKVSDADS YAEFLKKRKP NDKKTESGNQ  240
ELGDESVAEN GEVKKESWSS TEDIALLNAL KAFPKEVSMR WEKIAAAVPG KSKAACMKRV  300
AELKKGFRSA KASNEE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.52480.0bud| fruit| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008364492.20.0transcription factor MAMYB-like
RefseqXP_017185830.20.0transcription factor MAMYB-like
TrEMBLA0A498JNG80.0A0A498JNG8_MALDO; Uncharacterized protein
STRINGXP_008346503.10.0(Malus domestica)
STRINGXP_008364492.10.0(Malus domestica)
STRINGXP_008373612.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106861418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.13e-68MYB_related family protein