PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000716551 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 383aa MW: 41283.9 Da PI: 9.7587 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.5 | 4.2e-31 | 273 | 330 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +dp ++++tYegeH+h MDP0000716551 273 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERAPDDPAMLIVTYEGEHRHA 330 9************************9888****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 5.5E-18 | 216 | 269 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 4.3E-32 | 259 | 330 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.446 | 266 | 332 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-26 | 269 | 330 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-37 | 271 | 331 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-26 | 273 | 329 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MTVELMXFPK MEDQKAIQEA ASQGLQSMEH LIRFLSHQQQ HPNNQSARLD CTDITDHTVS 60 KFKKVISLLN RTGHARFRRG PAQPVQPVHF SSSHPSPSQT LSLAPALNLT PTPAPVPVTA 120 PAVVQQATIE SSFGQSQPHS MTLDFTRPNA FASNPKSAEI EFAKDNFSVS SGSSFMSSAI 180 TGDGSVSNGK LGSSIFLAPA PAVSGAKPPL STAPFKKXCH EHDHSDDTSC KFSASGSASX 240 SGKCHCSKRR KNRVKKTIRV PAISSKIADI PPDEYSWRKY GQKPIKGSPY PRGYYKCSTV 300 RGCPARKHVE RAPDDPAMLI VTYEGEHRHA PESVGLVYES TSRSSKGGGS GFLVSALIYR 360 LGRFLLCNLG FDGRCSTDAG VD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-21 | 259 | 329 | 2 | 71 | WRKY transcription factor 1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.16499 | 0.0 | bud| cell culture| fruit| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ996068 | 0.0 | KJ996068.1 Pyrus x bretschneideri WRKY domain class transcription factor (WRKY16) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001280840.1 | 0.0 | probable WRKY transcription factor 17 | ||||
Swissprot | Q9SV15 | 1e-134 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A498JEW2 | 0.0 | A0A498JEW2_MALDO; Uncharacterized protein | ||||
STRING | XP_008347647.1 | 0.0 | (Malus domestica) | ||||
STRING | XP_008378151.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1314 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.2 | 1e-114 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000716551 |