PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000713113
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CO-like
Protein Properties Length: 468aa    MW: 50367.8 Da    PI: 7.2834
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000713113genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.63.9e-0660100438
       zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                    + C+ +++  + lfC+ + ++lC  C   +H        H+
  MDP0000713113  60 KLCDSCKNSTAALFCRADLVFLCLPCDARIHAAnklttrHE 100
                    68******99*********************6556666666 PP
2zf-B_box25.82.3e-08102147342
       zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                     ++C+ +++ ++   C+ +   lC  C   +H+       H++vp+
  MDP0000713113 102 VWMCEVCDQAPAAVTCKADAAALCVACDADIHSAnplarrHERVPV 147
                    689*****************************66899999999986 PP
3CCT66.95.5e-23394437144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    Rea++lRY+eKrk+RkF+K+irY+sRKa+Ae+RpR+KGrF+k++
  MDP0000713113 394 REARVLRYREKRKNRKFQKTIRYASRKAYAETRPRIKGRFAKRT 437
                    9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.9E-1257104IPR000315B-box-type zinc finger
PROSITE profilePS501199.85557104IPR000315B-box-type zinc finger
CDDcd000218.60E-961104No hitNo description
PROSITE profilePS5011910.708100147IPR000315B-box-type zinc finger
PfamPF006431.2E-6102147IPR000315B-box-type zinc finger
CDDcd000211.87E-10103147No hitNo description
SMARTSM003361.3E-9105147IPR000315B-box-type zinc finger
PROSITE profilePS5101716.668394436IPR010402CCT domain
PfamPF062031.1E-17394436IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MTLDVGKNFS KNAFFILSQE VTVPETPRTA NKAAPSDLVL KISMGLQGGW SAPAVGLVAK  60
LCDSCKNSTA ALFCRADLVF LCLPCDARIH AANKLTTRHE RVWMCEVCDQ APAAVTCKAD  120
AAALCVACDA DIHSANPLAR RHERVPVEPF YDSAESIIVK STAAAPSSAG AAINYLVPNG  180
DVLSKTKDVN NDPASNWLIP NPNFNSKLQM DIAPDITKSS GDLFFPEMDL LLELDYPNSI  240
HTISGPGTDG VVPVQTDPIP PPSLKMNHNI SGPADQNCFD MDFCSSKFSS SFSYPTQSLS  300
QSVSSFSLDV GVVPDQNSLS DISYTFGRTA CNGVSEPGDV SYSFGQKASN NVSEPGDISY  360
PFGRKASNNV SEPGAPVSAT PASQPATQLC GLNREARVLR YREKRKNRKF QKTIRYASRK  420
AYAETRPRIK GRFAKRTKTE TETFDLIYGS GSATFISDPQ FGVVPTF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.124020.0bud| flower| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8977881e-52AB897788.1 Lemna gibba LgCOH1 mRNA for CONSTANS-like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341185.10.0zinc finger protein CONSTANS-LIKE 5 isoform X1
TrEMBLA0A498HN950.0A0A498HN95_MALDO; Uncharacterized protein
STRINGXP_008341185.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-84CONSTANS-like 5