PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000706016
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 345aa    MW: 37867.8 Da    PI: 7.2683
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000706016genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.43.4e-1091115126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt+lC+ f++ GtC+y  +C+FaH+
  MDP0000706016  91 FKTKLCCKFRA-GTCPYVTNCNFAHS 115
                    69*********.*************8 PP
2zf-CCCH18.63.2e-06164189126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    yk + C+ f+    C+yGd+C+F H+
  MDP0000706016 164 YKGRHCKKFYTEEGCPYGDNCTFLHD 189
                    78888********************7 PP
3zf-CCCH43.55.1e-14224249126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt++C+ +  tG+C++G++C+FaHg
  MDP0000706016 224 WKTRICNKWELTGYCPFGSKCHFAHG 249
                    8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.65E-888121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-1488123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.13190117IPR000571Zinc finger, CCCH-type
SMARTSM003560.00390116IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-791115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-10161191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-8162191IPR000571Zinc finger, CCCH-type
SMARTSM003560.058163190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23163191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-16220253IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-10221254IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9223250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422223251IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-11224249IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDYGRESNAV QVITGNSGGD IWSGDQAVWA TEDEYRVWNN GDAMADTMSN SSYDQRQSQS  60
HSGSEPPNKK SRNSQDATSS NRSKAIGKMF FKTKLCCKFR AGTCPYVTNC NFAHSIEELR  120
RPPPNWQDIV AAHEEEKAVS SEPREEYQIP IVSTGYGVET PRSYKGRHCK KFYTEEGCPY  180
GDNCTFLHDE QSKNRESVAI SLGPGGYGGA AAAVNGANNK PSNWKTRICN KWELTGYCPF  240
GSKCHFAHGV AELHRYGGGL VEGETRDSSS VAPDNKQGAM LSKTPGDAVV VSVPLVSHSD  300
VYHLGVPSQR SSIVIQRSGP RAHQKWKGPD KISRIYGDWI DDIE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.81750.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431653e-40AC243165.1 Gossypium hirsutum clone MX179E13-jom, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008373587.20.0zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ31e-132C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A498JQ570.0A0A498JQ57_MALDO; Uncharacterized protein
STRINGXP_008373586.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-127C3H family protein