PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000705416
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 341aa    MW: 38275.8 Da    PI: 7.7283
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000705416genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.88.8e-0986110126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    ykt+lC +f   G C+ G++C++aHg
  MDP0000705416  86 YKTRLCVNFKS-GMCRNGENCNYAHG 110
                    9********99.*************8 PP

2zf-CCCH28.42.8e-09148170325
                    S---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                    ++lC+ f+ + +C+yGdrC+F H
  MDP0000705416 148 MKLCKKFYNGEECPYGDRCNFLH 170
                    689******66************ PP

3zf-CCCH42.31.3e-13229254126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt+lC+ +  tG C++G++C+FaHg
  MDP0000705416 229 WKTKLCNKWETTGKCPFGEKCHFAHG 254
                    8************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-1383118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-884116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.05185112IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-685111IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-586110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-7145172IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-4145172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.117145173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-9148171IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-7148170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-17224260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-10225259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.582228256IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-7228255IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10229254IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MNFSDHSQFM PPQTPYNGGG SDVVNCWPPA FSMNNDDQHS QVEQQPFKRA RNSEERQSNP  60
MPYPPMNYRV QQPSAPVNKG ASNIFYKTRL CVNFKSGMCR NGENCNYAHG IEDIRHPPPN  120
WQELVSVRDE DRPLSGNWDD DQKIIHRMKL CKKFYNGEEC PYGDRCNFLH EDPSKFRDDS  180
GRFRENTAIS IGTTGAPVAH GSGSNPPEEN RLVNTGMDAS RGNVKPVYWK TKLCNKWETT  240
GKCPFGEKCH FAHGLTELQV PGGRTVEAEF LNTPPFSIPQ VVAAVNSSAT AIAALPPLNE  300
EGGQRKKGML KWKGSKKINR IYADWLDDVP LVHQHNLVES *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017184932.10.0zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT813e-90C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A498KEG20.0A0A498KEG2_MALDO; Uncharacterized protein
STRINGXP_008337321.10.0(Malus domestica)
STRINGXP_008361230.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.17e-82C3H family protein