PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000705416 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 341aa MW: 38275.8 Da PI: 7.7283 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.8 | 8.8e-09 | 86 | 110 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +f G C+ G++C++aHg MDP0000705416 86 YKTRLCVNFKS-GMCRNGENCNYAHG 110 9********99.*************8 PP | |||||||
2 | zf-CCCH | 28.4 | 2.8e-09 | 148 | 170 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+ f+ + +C+yGdrC+F H MDP0000705416 148 MKLCKKFYNGEECPYGDRCNFLH 170 689******66************ PP | |||||||
3 | zf-CCCH | 42.3 | 1.3e-13 | 229 | 254 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ + tG C++G++C+FaHg MDP0000705416 229 WKTKLCNKWETTGKCPFGEKCHFAHG 254 8************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-13 | 83 | 118 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-8 | 84 | 116 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.051 | 85 | 112 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-6 | 85 | 111 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-5 | 86 | 110 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-7 | 145 | 172 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.8E-4 | 145 | 172 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.117 | 145 | 173 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-9 | 148 | 171 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.1E-7 | 148 | 170 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-17 | 224 | 260 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-10 | 225 | 259 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.582 | 228 | 256 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.8E-7 | 228 | 255 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-10 | 229 | 254 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MNFSDHSQFM PPQTPYNGGG SDVVNCWPPA FSMNNDDQHS QVEQQPFKRA RNSEERQSNP 60 MPYPPMNYRV QQPSAPVNKG ASNIFYKTRL CVNFKSGMCR NGENCNYAHG IEDIRHPPPN 120 WQELVSVRDE DRPLSGNWDD DQKIIHRMKL CKKFYNGEEC PYGDRCNFLH EDPSKFRDDS 180 GRFRENTAIS IGTTGAPVAH GSGSNPPEEN RLVNTGMDAS RGNVKPVYWK TKLCNKWETT 240 GKCPFGEKCH FAHGLTELQV PGGRTVEAEF LNTPPFSIPQ VVAAVNSSAT AIAALPPLNE 300 EGGQRKKGML KWKGSKKINR IYADWLDDVP LVHQHNLVES * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017184932.1 | 0.0 | zinc finger CCCH domain-containing protein 39-like | ||||
Swissprot | Q9LT81 | 3e-90 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A498KEG2 | 0.0 | A0A498KEG2_MALDO; Uncharacterized protein | ||||
STRING | XP_008337321.1 | 0.0 | (Malus domestica) | ||||
STRING | XP_008361230.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8333 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 7e-82 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000705416 |