PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000704216 | ||||||||
Common Name | AP2D6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 25947.2 Da PI: 4.472 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.5e-19 | 35 | 84 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr +k +g+Wv+eIr p + + r++lg+++t+e+Aa+a +aa +l+g MDP0000704216 35 KYKGVRKRK-WGKWVSEIRLP---N-CrERIWLGSYDTPEKAARAFDAALFCLRG 84 8*****999.**********8...3.45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.2E-34 | 35 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-29 | 35 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.062 | 35 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-11 | 35 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-20 | 35 | 93 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.25E-30 | 35 | 94 | No hit | No description |
PRINTS | PR00367 | 1.5E-9 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-9 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MSNHFSKIFD TSSSSSSSXM LNQTSGEPSE RNDVKYKGVR KRKWGKWVSE IRLPNCRERI 60 WLGSYDTPEK AARAFDAALF CLRGRTAKFN FPDNPPDIPG GRSLSPAEIQ VEAARFANSE 120 IPRSHQSMSA PQAECQSMSE LQAESQSPSL SEGSGTAFMD TDFQVTPNES LSDLFGSFGS 180 GNYATEYGLF PGFDEMNGQF FSPASAAPTP AVDYAEENLD GQFFNPAQES FLWNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-15 | 35 | 92 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 36 | 42 | KGVRKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.30267 | 0.0 | stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU732430 | 0.0 | GU732430.1 Malus x domestica AP2 domain class transcription factor (AP2D6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315677.1 | 1e-170 | ethylene-responsive transcription factor ERF017-like | ||||
Swissprot | Q84QC2 | 3e-56 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A2P1MA35 | 1e-170 | A0A2P1MA35_MALDO; Ethylene respone factor 17-8s | ||||
STRING | XP_008344047.1 | 1e-172 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1479 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 2e-54 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000704216 |
Publications ? help Back to Top | |||
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