PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000703817
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 371aa    MW: 40804.8 Da    PI: 7.7601
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000703817genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.4e-32205260156
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                    k+r++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  MDP0000703817 205 KQRRNWSPELHRRFLHALQQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 260
                    79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.649202262IPR017930Myb domain
SuperFamilySSF466892.51E-18203263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28203263IPR009057Homeodomain-like
TIGRFAMsTIGR015579.8E-27205260IPR006447Myb domain, plants
PfamPF002497.0E-8207258IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MESTXEMQTS AKLGFREYVK ALEEERNKIQ VFQRELPXCL ELVTQAIERC RQQISDTTAD  60
YLHGQSECSE QTSSEGHVFE EFIPLKRISS SDSDEDEVQE SQEAKDTEKD DKKKPDWLRS  120
VQLWNTTPDA PLKEELPRKA LVMEVKRNGG AFQPFQREKS IGKTNGPVAK EPSSAPATSS  180
TTDTASGGSG GSNKKEEKDG QGQRKQRRNW SPELHRRFLH ALQQLGGSHA ATPKQIRELM  240
KVDGLTNDEV KSHLQKYRLH TRRPTPTMHG NSNSGAPAPQ FVVVGGIWVP PQEYAAMAAT  300
TASGEAANGI YAPLASTPAV TQVSPPIQRP RPKQPKPFHS DERVSHSEGR GHSNSTATSS  360
STHTPASPVV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-14205258154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-14205258154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-14205258154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-14205258154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.256730.0leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008339698.20.0transcription factor HHO3-like
SwissprotQ9FPE81e-101HHO3_ARATH; Transcription factor HHO3
TrEMBLA0A498HLS20.0A0A498HLS2_MALDO; Uncharacterized protein
STRINGXP_008339698.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39183363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.18e-89G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]