PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000700887 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 188aa MW: 20872.4 Da PI: 8.6113 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 56.5 | 5.7e-18 | 23 | 62 | 20 | 59 |
S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 20 fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 rsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ MDP0000700887 23 LCRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 62 57*************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 2.35E-14 | 21 | 64 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-17 | 23 | 64 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-12 | 24 | 62 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.055 | 25 | 64 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-10 | 25 | 63 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MARLFVNCNS QKIYVVSHRS HVLCRSYYKC TNAGCPVRKH VERASHDPKA VITTYEGKHN 60 HDVPTAKSSS HDTSGPTNVN VPSRIRPEES DTISLDLGVG MTSGGEIRTN EHLQLHSDLV 120 ERXXHTNSNF RFAQNTXVST YYGVLNGGMN QYGSRENPSE SRSMEILPLN HSSYPYPQNM 180 GRVLTGP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-17 | 25 | 64 | 38 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-17 | 25 | 64 | 38 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008342208.2 | 1e-109 | probable WRKY transcription factor 20 isoform X1 | ||||
Refseq | XP_028955929.1 | 1e-110 | probable WRKY transcription factor 20 isoform X2 | ||||
Swissprot | Q93WV0 | 1e-55 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | A0A498KCY0 | 1e-106 | A0A498KCY0_MALDO; Uncharacterized protein | ||||
STRING | XP_008342208.1 | 1e-109 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3946 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.1 | 1e-58 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000700887 |