PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000699611
Common NameC3HL7
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 707aa    MW: 77020.1 Da    PI: 5.35
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000699611genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25e-07277297526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C+ f++ GtC+ Gd C +aHg
  MDP0000699611 277 PCPEFRK-GTCRQGDACEYAHG 297
                    8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.34E-1127152IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.9E-1529155IPR020683Ankyrin repeat-containing domain
PfamPF127961.1E-673138IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.73573148IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01373103IPR002110Ankyrin repeat
CDDcd002042.69E-775148No hitNo description
SMARTSM002480.64108140IPR002110Ankyrin repeat
PROSITE profilePS500889.938108143IPR002110Ankyrin repeat
SMARTSM003565.4E-5272298IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4277297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.784277299IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.944307331IPR000571Zinc finger, CCCH-type
SMARTSM0035631307330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MCSGSKRNPS STDTIMEREK QEGTRFNFSI LLELAACDDX EGFKRAVEEE GLDVDEASYW  60
CGRLIGSKKL GFEXRTPLMV AAMFGSMNVL NYILQSCLVD VNKACGSDRA TALHCAVAGG  120
SAASAEVVKL LLAASADASS LDANGNQPGD LIAPAYSSSF GSRKKALEVM LKGVPSIDEP  180
FDFSEQMINE TEGQEQQEMT TPRASKDGTE KKEYPVDLSL PDIKNGIYST DEFRMYTFKV  240
KPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FRKGTCRQGD ACEYAHGIFE  300
CWLHPAQYRT RLCKDETGCT RRVCFFAHKP EELRPLYAST GSAVPSPRSF SATAASLDMG  360
SITPLSLNSP SMMIPPDSTP PMTPTGPSSP MGGNMWQNNP NFAPPTLQLP GSRLKSTLSA  420
RDMDFEIEML SLERDRRXQQ RLIDEMSGSP SSWNKGLSPA SPFSASGNRT GELNTFGXVN  480
PTNLDDIFGS LDPAILPQFN GLSRDATASQ LHSPTGIQMR QNMNLQARPS YSASLSSSPV  540
RASPMFGVDA SSAAAVFNSR SAAFAKRSQS FIERSAGNRN SVVSSSADFG TIKPSNLSDW  600
GSPGGKLDWG IQGEELNKLR KSASFGFRSN GSSSPTASSM MPTNGDEPDV SWVQSLVKDG  660
PQASQQRGQF GFEDQQQQQC HPNNGGPEML PAWVEQLYFE QEQMVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.28430.0bud| fruit| leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315927.10.0zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A498IRT10.0A0A498IRT1_MALDO; Uncharacterized protein
STRINGXP_008384793.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein