PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000696333
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 212aa    MW: 24118.7 Da    PI: 7.7533
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000696333genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.33.1e-161765149
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                   krien+    v+fskRr g+ KKA+E+ +LC+ ev +++fs++gk + y
  MDP0000696333 17 KRIENEEDLLVSFSKRRSGVYKKASEMITLCGGEVGIVVFSPSGKPFSY 65
                   79******************************************96655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.044969IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-23968IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-251097IPR002100Transcription factor, MADS-box
CDDcd002651.78E-311081No hitNo description
PRINTSPR004043.9E-171131IPR002100Transcription factor, MADS-box
PfamPF003194.7E-191865IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-173146IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-174667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MAMEGKQTRG RQKIEMKRIE NEEDLLVSFS KRRSGVYKKA SEMITLCGGE VGIVVFSPSG  60
KPFSYGHPSV DNVINRFLDQ NPPENDDYTI QFMEAHRQTR ISEAIEQYDE LINQLEDVRE  120
RQKSLLRKAR RRRNREHLWW SAPLDELGVD ELKQVYASSA ELHMXISNHL KERSTNIFGA  180
SSSGSVQQTN LNFYANPSGT GSYAFPPGYG H*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008371739.31e-158agamous-like MADS-box protein AGL62
TrEMBLA0A498JYA21e-137A0A498JYA2_MALDO; Uncharacterized protein
STRINGXP_008371739.11e-155(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-38AGAMOUS-like 62