PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000695359 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 241aa MW: 26731.8 Da PI: 4.073 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41 | 3.2e-13 | 159 | 181 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+++++tG Ck+G++CkF+H+ MDP0000695359 159 EDCSYYLKTGSCKFGSNCKFNHP 181 89********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 6.67E-7 | 154 | 183 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.094 | 155 | 183 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-6 | 155 | 182 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.7E-11 | 159 | 181 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-6 | 161 | 181 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence Send to blast |
MALSEATSVV PPNPETPSTN HAHSDXGSLP SSPDPDPTPS DLXHAVLDEL QKLDLKEPVE 60 EGDXEPDELQ KLDSTEKVEE DGVGELQKLD LKEEEDGAGE LQTLDLKEEE GGEGEEEEEK 120 SSGEREGWEE DGGEVEEKKX EETQESNRRY QYPVRPEAED CSYYLKTGSC KFGSNCKFNH 180 PVSXKTNQGL HSLLLGSMDL DGRIGFSKFS KLRTSKSPHQ GRIDEEMSDL EEVRLLAMFL 240 * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.13055 | 6e-81 | fruit| leaf| root |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB545981 | 2e-49 | AB545981.1 Pyrus pyrifolia genes for F-box proteins, S ribonuclease, complete cds, haplotype: S4. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009333889.1 | 8e-89 | PREDICTED: zinc finger CCCH domain-containing protein 67-like | ||||
TrEMBL | A0A498KV37 | 1e-92 | A0A498KV37_MALDO; Uncharacterized protein | ||||
STRING | XP_008346712.1 | 3e-93 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G48440.1 | 3e-14 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000695359 |