PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000695221
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 540aa    MW: 60549.3 Da    PI: 7.9367
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000695221genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012116135221
                    EETTTTEEESSHHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                    +C+ Cgk F +   L +H r
  MDP0000695221 116 SCEVCGKEFETLRALATHSR 135
                    6*****************65 PP
2zf-C2H213.80.00018380402123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC  C+k+Fs+   L  H+r+H
  MDP0000695221 380 HKCRLCNKVFSTYQALGGHQRVH 402
                    79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.41E-5330No hitNo description
PROSITE profilePS5015710.118330IPR007087Zinc finger, C2H2
SMARTSM003550.98325IPR015880Zinc finger, C2H2-like
PfamPF139128.0E-7325IPR007087Zinc finger, C2H2
PROSITE patternPS000280525IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.30282111IPR007087Zinc finger, C2H2
PROSITE patternPS00028084106IPR007087Zinc finger, C2H2
SMARTSM003550.4284106IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.36E-784137No hitNo description
PfamPF139122.2E-485108IPR007087Zinc finger, C2H2
SMARTSM003550.044115137IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93115138IPR007087Zinc finger, C2H2
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
PfamPF139127.7E-5117139IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-4378403IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.58E-9379402No hitNo description
SMARTSM003550.0062380402IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.094380407IPR007087Zinc finger, C2H2
PfamPF139124.3E-8380404IPR007087Zinc finger, C2H2
PROSITE patternPS000280382402IPR007087Zinc finger, C2H2
SuperFamilySSF576672.58E-9453480No hitNo description
Gene3DG3DSA:3.30.160.604.0E-4456484IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.14458480IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-9458480IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.279458485IPR007087Zinc finger, C2H2
PROSITE patternPS000280460480IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MEHVCKLCKK SFLSGRVLGG HMRCHGAKKS AKTEKNIEMC RAHSEVEDDD HAGYGLRVNP  60
KKSWKFSGHS KFEASAGEEK EFVCRCRVCG KGFHSMRAMF GHMRHHSGRE RKEAQSCEVC  120
GKEFETLRAL ATHSRCHSKS IRGTDGLETV SSSKKLAVDC CQYSSETMGL IRKKRSKRLR  180
YKITNSSCSF SSFSVNESKY VTEFGEEVVE GAICLMIISG CGSNWDRISS VTESSDNNSL  240
SLEVQSPGXK NWIMGNKGGV SVCDDTVKFV DCISDGKNVS VXKKVLEFSE NNXGFANXEE  300
KNVETEDRFF RGVGYKRPRL XEESVFGLCD TEMEMNLDII KEVELDVAAF GSMKSGLNNK  360
PKFYATESEV FADSQKKREH KCRLCNKVFS TYQALGGHQR VHKSTSTTSL VNIEDYEDRI  420
PINKFSKMEY SCKLAKPECS DNSAAEEKTE RVIENKGHKC SICLKVFATG QALGGHKRVH  480
FGKDPETGAE ESRVLKQQIS DICDAFDLSR PIENGDVDFK SWWPGNEHKQ ELLMDLMPN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341644.20.0zinc finger protein 43-like
TrEMBLA0A498HIL20.0A0A498HIL2_MALDO; Uncharacterized protein
STRINGXP_008341644.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-14C2H2-like zinc finger protein