PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000692406
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 384aa    MW: 42133.7 Da    PI: 8.5088
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000692406genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1051.2e-32561982134
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa......sec....eaesssssasnsss 87 
                     g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak++i+el+ ++ +++      +      +++++ +++++++ 
  MDP0000692406  56 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDKLGLNQPSKVVDWLLDAAKHEIDELPPLPMPPPgtfglnH-PslvlTSSHDDQTNAHPQL 150
                    689*************************************************************888884444431.1233333333333334444 PP

            TCP  88 gkaaksaakskksqksaasalnlakesrakararare.rtrekmrikn 134
                    +++ + + +s+  ++s+    nl++  rak+++ ar+ r++e+  +++
  MDP0000692406 151 SHNHRGEGPSSGIDRSNVWPTNLDAXWRAKSKEIARDtRNEEEEEKRK 198
                    4666666677777777777889999999****9999966666665553 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.57158116IPR017887Transcription factor TCP subgroup
PfamPF036344.9E-2958195IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MIKSLISEAD FKEAGAGSAS RDEQANKTSS NPNLSRSSTP WPRLKDPRIV RVSRAFGGKD  60
RHSKVCTIRG LRDRRVRLSV PTAIQLYDLQ DKLGLNQPSK VVDWLLDAAK HEIDELPPLP  120
MPPPGTFGLN HPSLVLTSSH DDQTNAHPQL SHNHRGEGPS SGIDRSNVWP TNLDAXWRAK  180
SKEIARDTRN EEEEEKRKDN LGISDDQKQA GNNIDGNSSN XFLTRGSNTN PPFFPGLLNS  240
STNMPYAYQN WDHPHQTSSF PLSQLGSHGF QSQXTDLHNF LNVLSLPSTL SLSTTQSYFP  300
SHNAAATGEI DPRQFNHLQL LNSSSSTSTS QNLLPNSLST PAPYPSSQTL RAPHLSMVTK  360
LVHSSNNTGS GHQSNNDQGP LPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1763117155Putative transcription factor PCF6
5zkt_B2e-1763117155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.163240.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5010670.0KM501067.1 Malus domestica TCP domain-containing protein 13 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008357787.20.0transcription factor TCP13
TrEMBLA0A498J3C30.0A0A498J3C3_MALDO; Uncharacterized protein
STRINGXP_008357787.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.12e-41plastid transcription factor 1