PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000691658 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | NF-YC | ||||||||
Protein Properties | Length: 109aa MW: 12084.9 Da PI: 10.2212 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 67.7 | 2.1e-21 | 56 | 107 | 19 | 69 |
NF-YC 19 helPlarikkilka.dedvkmisaeaPvllskacelfileltlrswlhaeen 69 h+lPl rikki+k edvkmis eaP+++ska elfi elt rsw+ +++ MDP0000691658 56 HSLPLVRIKKIMKNsGEDVKMISGEAPIVFSKASELFIEELTRRSWMTTQQG 107 99***********6269********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.28E-16 | 37 | 108 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.3E-22 | 53 | 108 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.5E-13 | 57 | 107 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MXSSSSNSAG MFSAILVLVH KFCHLTCFRT LVIQLAYHRS VLEFLHGDIT GRSGPHSLPL 60 VRIKKIMKNS GEDVKMISGE APIVFSKASE LFIEELTRRS WMTTQQGK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-17 | 56 | 108 | 16 | 67 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009350655.1 | 6e-34 | PREDICTED: nuclear transcription factor Y subunit C-3-like | ||||
TrEMBL | M5WEX8 | 6e-32 | M5WEX8_PRUPE; Uncharacterized protein | ||||
STRING | XP_009350655.1 | 2e-33 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10559 | 28 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 6e-18 | nuclear factor Y, subunit C3 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000691658 |