PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000689162
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 304aa    MW: 33728.7 Da    PI: 7.4983
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000689162genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.51.4e-28149208159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv++sae+p v++ tYegeHnh 
  MDP0000689162 149 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApSCPVKKKVQKSAENPCVLVATYEGEHNHM 208
                    58***************************99****************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.0E-28141210IPR003657WRKY domain
PROSITE profilePS5081125.993144210IPR003657WRKY domain
SuperFamilySSF1182902.75E-24146210IPR003657WRKY domain
SMARTSM007742.4E-31149209IPR003657WRKY domain
PfamPF031062.4E-23150207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDSTWVNTSL GLNLVPFCSA DDHQAPATQV ASHHDVLAEE LNRISVENKK LTEMLTALCE  60
NYNTLQSHVR ELMITKQQQN NSSDIYRKRK AGSEDYNNVI GLISPGTNTD TSSFSDDQEY  120
SCKKPREHAN LKISRVYVRT DASDTRLIVK DGYQWRKYGQ KVTRDNPSPR AYYKCSFAPS  180
CPVKKKVQKS AENPCVLVAT YEGEHNHMHP ESRAEVTLIA PVSPNQNQPP ISVSPSMAKR  240
SAPPTFSCDI NRISPNTTMC PQETEAATFQ QFLVQQMASS LTQDPNFTSA LAAAISGRIS  300
DHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-181482101677Probable WRKY transcription factor 4
2lex_A1e-181482101677Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.257170.0leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00465DAPTransfer from AT4G31800Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1129070.0JX112907.1 Malus x domestica WRKY transcription factor 40b mRNA, complete cds.
GenBankJX1129130.0JX112913.1 Malus hupehensis WRKY transcription factor 40b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017189732.10.0probable WRKY transcription factor 40 isoform X1
TrEMBLA0A498HUB30.0A0A498HUB3_MALDO; Uncharacterized protein
STRINGXP_008378959.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-74WRKY DNA-binding protein 40