PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000688613

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C2H2

Protein Properties

Length: 465aa MW: 51335.6 Da PI: 9.821

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000688613	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H MDP0000688613 6 FVCEICNKGFQRDQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	12.9	0.00034	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ MDP0000688613 82 WKCEKCSKKYAVQSDWKAHSKTC 104 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-5	5	28	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.27E-7	5	28	No hit	No description
SMART	SM00355	0.017	6	28	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	7.3E-5	6	28	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	6	28	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	47	77	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.1E-4	70	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.27E-7	77	102	No hit	No description
SMART	SM00355	140	82	102	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MAKNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKSRLNK EVKKKVYICP EKTCVHHDPS 60 RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYK CDCGTLFSRK 120 DSFITHRAFC DALTEESARL ATSSVAGAPT NLNFGNDAML NNPMMNNSQX VVQDVSQISM 180 QYEQGLMRQD FNVLDQLHQH EKSRLSLWLN QQANSNSNQI NLMDDMQANP NHPLYVTSSS 240 SNTFPEMVQM PSSSNNVNLF GSSDSMSTFG ASTRGXNLSL SPVQESGXKK LIGNNSNLVG 300 SSXSKPPXAP MSATALLQKA AQSGSTRSSN NQGSSLGVNV MSSSSFSNTL MGFSNLNQDR 360 SNELHXFVQN AXQXGGXSAN LSSLTSSSSH TSSTTLEQLM NTIQRGSKNI GTIDRQNSPT 420 RDFLGMGGGA XDHADQLSHN NRQMFFPQDL AKFXSSMSQF TSNH*

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MAKNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKSRLNK EVKKKVYICP EKTCVHHDPS  60
RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYK CDCGTLFSRK  120
DSFITHRAFC DALTEESARL ATSSVAGAPT NLNFGNDAML NNPMMNNSQX VVQDVSQISM  180
QYEQGLMRQD FNVLDQLHQH EKSRLSLWLN QQANSNSNQI NLMDDMQANP NHPLYVTSSS  240
SNTFPEMVQM PSSSNNVNLF GSSDSMSTFG ASTRGXNLSL SPVQESGXKK LIGNNSNLVG  300
SSXSKPPXAP MSATALLQKA AQSGSTRSSN NQGSSLGVNV MSSSSFSNTL MGFSNLNQDR  360
SNELHXFVQN AXQXGGXSAN LSSLTSSSSH TSSTTLEQLM NTIQRGSKNI GTIDRQNSPT  420
RDFLGMGGGA XDHADQLSHN NRQMFFPQDL AKFXSSMSQF TSNH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-39	78	144	3	69	Zinc finger protein JACKDAW
5b3h_F	7e-39	78	144	3	69	Zinc finger protein JACKDAW
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.22782	0.0	bud\| fruit\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269\|PubMed:21571950}.
Uniprot	TISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269\|PubMed:21571950}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009342741.1	0.0	PREDICTED: zinc finger protein JACKDAW-like
Refseq	XP_009349713.1	0.0	PREDICTED: zinc finger protein JACKDAW-like
Swissprot	Q9LVQ7	1e-101	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A498IBV9	0.0	A0A498IBV9_MALDO; Uncharacterized protein
STRING	XP_008387606.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	3e-86	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	MDP0000688613

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]