PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000685835
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 247aa    MW: 27459.8 Da    PI: 3.8943
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000685835genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH413.3e-13190212426
                    ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    e C+++++tG Ck+G++CkF+H+
  MDP0000685835 190 EDCSYYLKTGSCKFGSNCKFNHP 212
                    89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.63E-7185214IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094186214IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6186213IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-11190212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-6192212IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MALSEATSVV PPNPETPSTN HAHSDQGSLP SSPDPDPTPS DLDHAVLDEX QKLDLKEPVE  60
EGDXEPDELQ KLDSTEKVEE DGVGELQKLD LKEEEDGTGE LQTLDLKEEE GGEGEEEEEK  120
SSGEREVEIL NREENERQSE QSYQSDGGGG EGWGGNQGWE EDGGEVEEKK AEETQESNRR  180
YQYPVRPEAE DCSYYLKTGS CKFGSNCKFN HPVSRKTNQV YLFSFDYSVE RLDLFVYICP  240
ASVSFS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.130551e-104fruit| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009333889.11e-105PREDICTED: zinc finger CCCH domain-containing protein 67-like
TrEMBLA0A498KS161e-149A0A498KS16_MALDO; Uncharacterized protein
STRINGXP_008346712.11e-112(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.18e-15C3H family protein