PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000685403
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 440aa    MW: 49005.2 Da    PI: 5.8258
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000685403genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3361.2e-11325431395
                    EE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS..............-EEEEEE..EEETTEEEE-TTHH.HHHHHHT--TT- CS
             B3   3 kvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg..............rsWevkliyrkksgryvltkGWk.eFvkangLkegD 78 
                    k l  sd ++++rl +pk+ +++h     +     +k  ++ d++               r+ ++k+  +++++ yvl +GW+ eFv   gLke+D
  MDP0000685403 325 KRLAASDLGELSRLLMPKEAVRKHvmsylD-----DKSAKMVDSKEglpvtivdwdtcnrRELTFKH--WNSGDFYVLNGGWRpEFVVRRGLKEND 413
                    77889*******************765541.....44555555444477777777779889999999..*************879*********** PP

                    EEEEEE-SS.SEE..EEE CS
             B3  79 fvvFkldgr.sefelvvk 95 
                     + ++ld++ ++ ++ ++
  MDP0000685403 414 EIGLYLDWDwKTSKYIFR 431
                    *******99887776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5147317.30437141IPR002902Gnk2-homologous domain
PfamPF016572.8E-1742138IPR002902Gnk2-homologous domain
PROSITE profilePS5147320.915147255IPR002902Gnk2-homologous domain
PfamPF016572.0E-14158252IPR002902Gnk2-homologous domain
SuperFamilySSF1019361.2E-15319436IPR015300DNA-binding pseudobarrel domain
CDDcd100179.26E-14321432No hitNo description
SMARTSM010190.0025323433IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-11324431IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-8325431IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MGYSRPLLFF ILPIILGLHA PAIADDVDNG VCTTTADYCW SCSGTNETFN NGSNYERNLH  60
TILSSFSSNK TEINSGFYNS SLGQGPEKVN AMALCRGDVP LNDCHTCFNE SISILRQNCT  120
NQKQATIWAQ RCTVHYSNVS IFGVAEDDPV KFVPGPTNAP NAEQFKQVLN PLVVNLSGTA  180
AAGDSMKKFA AGHALVPATN QTIYAIVQCT PDLDRQNCSE CLDEAISDIP QCCEGKEGGR  240
VLRPSCNLRF ESNLFYDAAS DSLVNLPGKQ AMKLEEEDHH PSNVRLFGVG LGSSLNDPRG  300
GHEPSTDLYL WDPTWDYSSI WKIRKRLAAS DLGELSRLLM PKEAVRKHVM SYLDDKSAKM  360
VDSKEGLPVT IVDWDTCNRR ELTFKHWNSG DFYVLNGGWR PEFVVRRGLK ENDEIGLYLD  420
WDWKTSKYIF RFSVLQRAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6gre_A4e-134925118210Cysteine-rich repeat secretory protein 2
6gre_B4e-134925118210Cysteine-rich repeat secretory protein 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.130740.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008347598.20.0cysteine-rich repeat secretory protein 38-like
TrEMBLA0A498JZ900.0A0A498JZ90_MALDO; Uncharacterized protein
STRINGXP_008347598.10.0(Malus domestica)
STRINGXP_008377950.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.14e-16B3 family protein