PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000683814 | ||||||||
Common Name | LOC103401682 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 324aa MW: 35744.1 Da PI: 6.876 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.1e-20 | 135 | 184 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g MDP0000683814 135 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAFKLRG 184 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.47E-34 | 134 | 194 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-32 | 135 | 193 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-38 | 135 | 198 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.235 | 135 | 192 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-23 | 135 | 193 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-14 | 136 | 184 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 136 | 147 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 158 | 174 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MATSIDLYSS STMTSDLSDP SREDQLMKAL MPYMKSASST SPSTSYTFPP QNNQNFNLYP 60 DFCSAPMISQ AGAIGLNQLT PSQILQIQSQ MILQQHQQKQ QISAFASSPA HTLKLLRPKA 120 VPMKQAGTPS KPTKLYRGVR QRHWGKWVAE IRLPRNRTRL WLGTFDTAEE AALAYDKAAF 180 KLRGDFARLN FPHLRHQGAL VCGDFGHYKP LHSSVDAKLQ AICQSLGANS TKQGNTGEPC 240 PVAETKPVVS APLEAKMDDS FKSELKSESE AFSSSSYSPS RSDESSSPES DITFLDFSDS 300 QWDEAENFGL EKYPSVEIDW SAI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-21 | 134 | 192 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.12817 | 0.0 | fruit| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU732475 | 0.0 | GU732475.1 Malus x domestica AP2 domain class transcription factor (AP2D51) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001288047.1 | 0.0 | ethylene-responsive transcription factor ERF060 | ||||
Swissprot | O65665 | 2e-83 | ERF60_ARATH; Ethylene-responsive transcription factor ERF060 | ||||
TrEMBL | A0A1P8VHT6 | 0.0 | A0A1P8VHT6_9ROSA; DREB6.3 | ||||
TrEMBL | F8TVR4 | 0.0 | F8TVR4_MALDO; Ethylene response factor 4 | ||||
STRING | XP_008338614.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 2e-56 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000683814 |
Entrez Gene | 103401682 |
Publications ? help Back to Top | |||
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