PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000678327
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 670aa    MW: 73689 Da    PI: 7.7974
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000678327genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.9e-07267287526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C+ f++ G C+ Gd C +aHg
  MDP0000678327 267 PCPEFRK-GSCQKGDACEYAHG 287
                    8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.3E-1523170IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.49E-1526146IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.9776993IPR002110Ankyrin repeat
PfamPF127962.4E-969136IPR020683Ankyrin repeat-containing domain
CDDcd002042.68E-1469189No hitNo description
PROSITE profilePS5029716.12269149IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00116999IPR002110Ankyrin repeat
SMARTSM002480.0022104136IPR002110Ankyrin repeat
PROSITE profilePS5008810.419104139IPR002110Ankyrin repeat
PROSITE profilePS5010313.244262289IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-5262288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4267289IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-5267287IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.216297321IPR000571Zinc finger, CCCH-type
SMARTSM0035618297320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MCKVSKDKLS PSNFIMESEF QKQKSVLVEL SASDNLDAFR TEVEEKGFHV DEAGFWYGRR  60
IGSKQMGFED RTPLMIAAMF GSTKVLKYII ESGMVDVNRS CGSDRVTALH CAAAGGSTAS  120
LEVVKLLLDA SADANCVNAY GNRPVDLIAP ALKSPCSSRR KAMEMLLRGD KSVMESDQIA  180
IEEGDQRKVS SPQMPKEGSD KKEYPIDISL PDINNGIYGT DEFRMFTFKV KPCSRAYSHD  240
WTECPFVHPG ENARRRDPKK YPYSCVPCPE FRKGSCQKGD ACEYAHGVFE SWLHPAQYRT  300
RLCKDETGCT RKVCFFAHRP EELRPVYAST GSAMPSPRSM SVSAADMATL SPLALGSSAM  360
SMPITSTPPM SPLAAASSPK NGGLWQNKVS LTPPTLQLPG SRLKSACSAR DLELEMELLG  420
LDSHSSQQHQ QHQQQQLWDE ISRLSSSPPY SRLGELKPTN LEDAFGSFDP SLLSQLQAHS  480
QKPSTPTHRQ NMNQLRSSYP TNLSSSPVRK PSSFGLDSPS ALAAAVMNSR SAAFAQQRSQ  540
SFIDRGAMNH LSGLNAPVNS STMRQSSDWS SPGGKLDWGI QGDELNKLKK SASFGFRSNN  600
AGTPPGFKPS AVDEPDVSWV NSLVKDVSSE RSELFVADNK QRYRHLSNGA HEMLPSWVEQ  660
MYIEQEQRA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.14450.0bud| flower| fruit| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008369265.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A498JLI60.0A0A498JLI6_MALDO; Uncharacterized protein
STRINGXP_008369265.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein