PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000676216 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 355aa MW: 38457.5 Da PI: 8.5574 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.1 | 2.1e-29 | 51 | 109 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ +p+++++tY +Hnh+ MDP0000676216 51 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRLNPTMLIVTYVCDHNHP 109 69*************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.8E-31 | 43 | 111 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-25 | 48 | 111 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.3E-35 | 50 | 110 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.364 | 51 | 111 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.5E-25 | 52 | 109 | IPR003657 | WRKY domain |
CDD | cd06222 | 2.51E-8 | 243 | 302 | No hit | No description |
Pfam | PF13456 | 1.2E-5 | 244 | 305 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MEDSPSSASE DDTQVATPLP KKRRGVQKRV VSVPIGDVEG SKSKGEGHPP SDSWAWRKYG 60 QKPIKGSPYP RGYYRCSSSK GCPARKQVER SRLNPTMLIV TYVCDHNHPM PTTKANQSSS 120 VTPTTITATA TSPTTESELP AKTEELTIFT SQVDLDLSDD SPTLLSDFGW FNDAASTVVL 180 ESPICLGNSS CMNNDVATRL KDEDEYLFAD LGELPEGSVI FRHRNRMVES DDQNRRCSLS 240 AVLNFDGSVS NAKXGAGFVV RNEDGLVIGA GAFNLNGXII NEAEARALKE GLAYIKRKGF 300 NKKGIQGGNV RSGRQEYAGK EGIEKQKTKR QQRGGSGERE KGGAALLGSV RVER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 9e-21 | 28 | 112 | 6 | 80 | Disease resistance protein RRS1 |
5w3x_D | 9e-21 | 28 | 112 | 6 | 80 | Disease resistance protein RRS1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU984033 | 1e-58 | GU984033.1 Cucumis sativus WRKY protein (WRKY47) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008381191.1 | 0.0 | probable WRKY transcription factor 69 | ||||
Swissprot | Q93WV5 | 7e-74 | WRK69_ARATH; Probable WRKY transcription factor 69 | ||||
TrEMBL | A0A498J3D6 | 1e-179 | A0A498J3D6_MALDO; Uncharacterized protein | ||||
STRING | XP_008381191.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2770 | 34 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58710.2 | 1e-67 | WRKY DNA-binding protein 69 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000676216 |
Publications ? help Back to Top | |||
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