PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000673185 | ||||||||
Common Name | C3HL8, C3HL9, LOC103454389 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 732aa MW: 79636.9 Da PI: 6.2928 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.4e-07 | 307 | 327 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg MDP0000673185 307 PCPDFRK-GACRRGDMCEYAHG 327 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 6.8E-18 | 40 | 181 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.4E-17 | 45 | 180 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.3E-10 | 83 | 156 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 6.46E-15 | 86 | 162 | No hit | No description |
PROSITE profile | PS50297 | 15.831 | 87 | 162 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0096 | 87 | 117 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.007 | 122 | 157 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1.3E-4 | 122 | 154 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 302 | 328 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 307 | 329 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-4 | 307 | 329 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.9E-5 | 307 | 327 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 58 | 337 | 360 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MCNGSEQIKP NSSPAASLIS VDESRLSNTA MNHLTVETED AFASLLELAA NNDIQSFKRS 60 IEHDPSGIDE IXLWYCRQKG SKQMVNEQRT PLMVAATYGS IDVMQLILSL SDADVNQACG 120 RDRSTALHCA ASGGAENAVD CVKLLLGAGA DPNSVDANGH HPNDVIVVPP RLQNVKLALE 180 ELLMVNGSVG EQTLTVSTRT VHSSSPPLSA SPENGSPSAF DFNCSPTKSK FYNSLSSASE 240 KKEYPVDPSL PDIKNSIYST DEFRMYSFKV RPCSRAYSHD WTECPFVHPG ENARRRDPRK 300 FHYSCVPCPD FRKGACRRGD MCEYAHGVFE CWLHPAQYRT RLCKDGISCA RRVCFFAHTT 360 DELRPLYVST GSAVPSPRSS TSGALAXDFA AAMSLLPGSP SSVNVMSPSP FTPPMSPSAN 420 GMSHSSLAWP QPNVPALHLP GSNFQSSRLR SSLCARDMPS DDFDLLPEFD MQQQQLLNEL 480 SCLSQPSLSN NSLNRSGRRT TLTPSNLDDL FSAESLSPRY SDQSLQSGVF SPTHKSAVLN 540 QFQQQQSMLS PIHTNFSPKA VDHALLQASY GGPSSGRMSP RNVEPISPMG SRVSMLAQRE 600 KQQQFRSLSS RELGSNSASI VGSSPNSWSK WGSSNGKPDW AVTTDELGKL RRSSSFELGN 660 NEEEPDLSWV QSLVKESPTE IKEKQTPSSG VTAAXSSNEG SNANSQRESV DHAVLGAWID 720 QMHLDLVAQQ N* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.9810 | 0.0 | bud| cell culture| fruit| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FM253563 | 0.0 | FM253563.1 Prunus cerasifera BAC insert containing Ma gene, resistant Ma1 allele, clone 76H19. | |||
GenBank | FM253564 | 0.0 | FM253564.1 Prunus cerasifera BAC insert containing Ma gene, ma1 susceptible allele, clone 40K9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008392207.2 | 0.0 | zinc finger CCCH domain-containing protein 30 isoform X1 | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A498I0Q2 | 0.0 | A0A498I0Q2_MALDO; Uncharacterized protein | ||||
STRING | XP_008392207.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1732 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | MDP0000673185 |
Entrez Gene | 103454389 |
Publications ? help Back to Top | |||
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