PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000673185
Common NameC3HL8, C3HL9, LOC103454389
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 732aa    MW: 79636.9 Da    PI: 6.2928
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000673185genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07307327526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C++f++ G C++Gd C +aHg
  MDP0000673185 307 PCPDFRK-GACRRGDMCEYAHG 327
                    8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.206.8E-1840181IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.4E-1745180IPR020683Ankyrin repeat-containing domain
PfamPF127962.3E-1083156IPR020683Ankyrin repeat-containing domain
CDDcd002046.46E-1586162No hitNo description
PROSITE profilePS5029715.83187162IPR020683Ankyrin repeat-containing domain
SMARTSM002480.009687117IPR002110Ankyrin repeat
PROSITE profilePS5008811.007122157IPR002110Ankyrin repeat
SMARTSM002481.3E-4122154IPR002110Ankyrin repeat
SMARTSM003564.0E-6302328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582307329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4307329IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-5307327IPR000571Zinc finger, CCCH-type
SMARTSM0035658337360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MCNGSEQIKP NSSPAASLIS VDESRLSNTA MNHLTVETED AFASLLELAA NNDIQSFKRS  60
IEHDPSGIDE IXLWYCRQKG SKQMVNEQRT PLMVAATYGS IDVMQLILSL SDADVNQACG  120
RDRSTALHCA ASGGAENAVD CVKLLLGAGA DPNSVDANGH HPNDVIVVPP RLQNVKLALE  180
ELLMVNGSVG EQTLTVSTRT VHSSSPPLSA SPENGSPSAF DFNCSPTKSK FYNSLSSASE  240
KKEYPVDPSL PDIKNSIYST DEFRMYSFKV RPCSRAYSHD WTECPFVHPG ENARRRDPRK  300
FHYSCVPCPD FRKGACRRGD MCEYAHGVFE CWLHPAQYRT RLCKDGISCA RRVCFFAHTT  360
DELRPLYVST GSAVPSPRSS TSGALAXDFA AAMSLLPGSP SSVNVMSPSP FTPPMSPSAN  420
GMSHSSLAWP QPNVPALHLP GSNFQSSRLR SSLCARDMPS DDFDLLPEFD MQQQQLLNEL  480
SCLSQPSLSN NSLNRSGRRT TLTPSNLDDL FSAESLSPRY SDQSLQSGVF SPTHKSAVLN  540
QFQQQQSMLS PIHTNFSPKA VDHALLQASY GGPSSGRMSP RNVEPISPMG SRVSMLAQRE  600
KQQQFRSLSS RELGSNSASI VGSSPNSWSK WGSSNGKPDW AVTTDELGKL RRSSSFELGN  660
NEEEPDLSWV QSLVKESPTE IKEKQTPSSG VTAAXSSNEG SNANSQRESV DHAVLGAWID  720
QMHLDLVAQQ N*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.98100.0bud| cell culture| fruit| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM2535630.0FM253563.1 Prunus cerasifera BAC insert containing Ma gene, resistant Ma1 allele, clone 76H19.
GenBankFM2535640.0FM253564.1 Prunus cerasifera BAC insert containing Ma gene, ma1 susceptible allele, clone 40K9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008392207.20.0zinc finger CCCH domain-containing protein 30 isoform X1
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A498I0Q20.0A0A498I0Q2_MALDO; Uncharacterized protein
STRINGXP_008392207.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]