PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000669078

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

G2-like

Protein Properties

Length: 330aa MW: 35474.9 Da PI: 5.6893

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000669078	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.3	4.7e-30	155	208	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv++v++L G+++A+Pkti+++m+v+gLt+e+v+SHLQkYRl MDP0000669078 155 RPRLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQMMNVEGLTRENVASHLQKYRL 208 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.842	152	211	IPR017930	Myb domain
SuperFamily	SSF46689	1.67E-19	152	212	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.3E-30	154	213	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-23	156	208	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-8	158	207	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MGEEVRMSEY EGGGSGGDDG DDEERVSEWE TGLPSADDLT PLSQPLIPIE LASAFSISPE 60 PSRTAVDVNR ASQKTVSTLR GGAHSQGFSS NYKSFDENRS DDVEPMIVEV DESGERYGSD 120 SRKSRKVDCS TEEADSTLRT ENLSPXDTSA RTLKRPRLVW TPQLHKRFVD VVAHLGIKNA 180 VPKTIMQMMN VEGLTRENVA SHLQKYRLYL KRMQGLSGDV GPSXSDQLFA TTPVPQSLHH 240 ESGGDCGGGS GPAGSGQSHG HGNGQFSFPM PYPPPGMMQM PVLGLSXGHG HMSMPGGAGX 300 HGGGYHGFES HRYNMGSMVS YQHXASNDK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	2e-35	155	211	1	57	Transcription factor LUX
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.24285	0.0	fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269\|PubMed:16006522, ECO:0000269\|PubMed:16164597, ECO:0000269\|PubMed:21236673, ECO:0000269\|PubMed:21753751, ECO:0000269\|PubMed:22311777}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269\|PubMed:16006522, ECO:0000269\|PubMed:16164597, ECO:0000269\|PubMed:17132630, ECO:0000269\|PubMed:21753751}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	1e-54	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008366258.2	0.0	transcription factor PCL1-like
Refseq	XP_008366259.2	0.0	transcription factor PCL1-like
Refseq	XP_008366260.2	0.0	transcription factor PCL1-like
Swissprot	Q9SNB4	6e-79	PCL1_ARATH; Transcription factor LUX
TrEMBL	A0A498IRX4	0.0	A0A498IRX4_MALDO; Uncharacterized protein
STRING	XP_008366258.1	0.0	(Malus domestica)
STRING	XP_008384933.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6957	33	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59570.1	5e-78	G2-like family protein

Link Out ? help Back to Top
Phytozome	MDP0000669078

Publications ? help Back to Top
Higham CF,Husmeier D A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana. BMC Bioinformatics, 2013. 14 Suppl 10: p. S3 [PMID:24267177]