PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000668122
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 234aa    MW: 25671 Da    PI: 10.7137
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000668122genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.2e-201867255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                   +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a+++a++k++g
  MDP0000668122 18 HYRGVRRRP-WGKWAAEIRDPV----KaARVWLGTFDTAEAAALAYDKAALKFKG 67
                   69*******.**********64....55************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.89E-241776No hitNo description
PfamPF008471.9E-131867IPR001471AP2/ERF domain
PROSITE profilePS5103225.2381875IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-321876IPR001471AP2/ERF domain
SMARTSM003801.3E-371881IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-231876IPR016177DNA-binding domain
PRINTSPR003671.4E-111930IPR001471AP2/ERF domain
PRINTSPR003671.4E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
METQFSPHKT RRNLRRQHYR GVRRRPWGKW AAEIRDPVKA ARVWLGTFDT AEAAALAYDK  60
AALKFKGSKA KLNFPERVQG SSESGCLTLI TTDQQDSLNI NPPQPNISRP TSSSVFDCTQ  120
YNNVTSSTSL LSSSSMPSQQ AAELPSFSMK FVGHLYLSSL SSNLQEAHMA PRKDKTVPAI  180
NAKNKNIIVA NGGTLGVTTR SKAKAFSVVL STPTSTLSNE QEYPRHHHVI TLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-261778163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11025RRNLRRQHYRGVRRRP
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the S phase of the cell cycle. {ECO:0000269|PubMed:23616605}.
UniprotTISSUE SPECIFICITY: Strongly expressed in proliferating cells. Detected in root tips, stipules, shoot apex, floral tissues, young siliques and abscission zones. {ECO:0000269|PubMed:23616605}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028960109.11e-82ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH541e-39EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A498JQ023e-81A0A498JQ02_MALDO; Uncharacterized protein
STRINGXP_008375519.14e-81(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.14e-26ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]