PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000665604 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 434aa MW: 46757.7 Da PI: 8.3697 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.7 | 3e-11 | 52 | 77 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p MDP0000665604 52 GEPDCSYYIRTGLCRFGATCRFNHPP 77 5799********************97 PP | |||||||
2 | zf-CCCH | 31.9 | 2.2e-10 | 107 | 126 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCk+G++CkF+H++ MDP0000665604 107 YYLKTGTCKFGATCKFHHPR 126 9*****************96 PP | |||||||
3 | zf-CCCH | 35 | 2.3e-11 | 151 | 173 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H++ MDP0000665604 151 ECAYYLRTGQCKFGGTCKFHHPQ 173 7********************97 PP | |||||||
4 | zf-CCCH | 38.9 | 1.4e-12 | 308 | 334 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ MDP0000665604 308 PGQPECQFYMKTGDCKFGAVCRFHHPM 334 5789*********************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.267 | 50 | 78 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-5 | 50 | 77 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.8E-8 | 52 | 77 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 55 | 78 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.2E-4 | 56 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.064 | 98 | 126 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.211 | 103 | 127 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.9E-8 | 107 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-4 | 107 | 126 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.389 | 146 | 174 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.8E-4 | 146 | 173 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-6 | 150 | 174 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-9 | 151 | 173 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.361 | 307 | 335 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-6 | 307 | 334 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-9 | 309 | 334 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.01E-5 | 311 | 337 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 313 | 335 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 3.7 | 355 | 364 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 434 aa Download sequence Send to blast |
MDFDAGIPMS RAAAPVTDAP SLSPALTQDA MWPMNLRSSE TLEAGGYPER TGEPDCSYYI 60 RTGLCRFGAT CRFNHPPNRK LAIAAARMKG EFPERIGQPE CQACISYYLK TGTCKFGATC 120 KFHHPRDKAG IAGRVALNIL GYPLRPQNEI ECAYYLRTGQ CKFGGTCKFH HPQPTNMMVS 180 VRGSPVYPTV QSPTTPGQQS YAGGVTNWSR ASFIPSPRWQ APSNYAPLIV PQGVVSVPGW 240 NAYSGQLGSV SSAESQQQTA GNSQMYGTSR QGEPENSGSQ GGFSPYRSGS IPVGFYALQR 300 ENVFPERPGQ PECQFYMKTG DCKFGAVCRF HHPMERLIPA PDCVLSPIGL PLRPFGPSCK 360 FDHPMGIFTY GLSASSSADA PARRLLGSTS GAASLNLASS GLVEAGSANP RRVSLSEPRQ 420 MPSAEDNNID REE* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.23966 | 0.0 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681808 | 9e-38 | LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012. | |||
GenBank | LN713256 | 9e-38 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008359919.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A498K500 | 0.0 | A0A498K500_MALDO; Uncharacterized protein | ||||
STRING | XP_008359919.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5321 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-168 | zinc finger protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000665604 |