PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000650955
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 266aa    MW: 28084.8 Da    PI: 9.3426
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000650955genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.2e-11116139427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     +C ++++tG CkyG++C+++H++
  MDP0000650955 116 LECXYYLKTGDCKYGPSCRYHHPR 139
                    58********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.4E-5112139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873112140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6116141IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8116139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5118140IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MRYNLSASSL EAPPETGRTR NGALQPERPA SKVVAAVRAT GDYPXRVGEP VCQAPLSPVP  60
SPGAQPTVGA TSLYGVTQLX SPXHGLASPY TSIPSSVGPS SSNXXEQVFP ERPGELECXY  120
YLKTGDCKYG PSCRYHHPRD RTVPRITCLL SPMGLPLRPT MRYDLSASSL VDMPVVQYPV  180
GSLLATLAPS SSSSDLRPEF LSASKRDTYX TRVPSSGNTS SSSGGLIFSQ SGSVSLSDVQ  240
LSSQTSSPLS NSRSTRPGGA FRRSI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.122111e-173fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028956222.11e-122zinc finger CCCH domain-containing protein 32-like isoform X2
SwissprotQ84W915e-53C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A498ISN91e-103A0A498ISN9_MALDO; Uncharacterized protein
STRINGXP_008389189.11e-120(Malus domestica)
STRINGXP_008389190.11e-123(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.21e-37C3H family protein