PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000650389
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 699aa    MW: 77917.1 Da    PI: 8.1011
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000650389genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.21e-114166126
                   --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                   +++++C++++rtG Cky ++C+F+H+
  MDP0000650389 41 PGERECPYYMRTGSCKYASNCRFNHP 66
                   5789*********************9 PP
2zf-CCCH26.31.3e-08177203127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++ C++f+rtG Ck+ ++Ck++H++
  MDP0000650389 177 PGQPDCSYFLRTGDCKFKSNCKYHHPK 203
                    5789*********************96 PP
3zf-CCCH331e-10225248326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                    + +C +++r+G+Ck+G+ CkF H+
  MDP0000650389 225 QNICTHYSRYGICKFGPACKFDHS 248
                    679********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.667122IPR000571Zinc finger, CCCH-type
SMARTSM0035662421IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1314068IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-64067IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-84266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-54367IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-44665IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4176203IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.352176204IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-6178203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-5181204IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6220248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.446222250IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4222249IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-8225248IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MAADWSGGCK YGKDCRYSHS KVKPSVAPVL ELNFLGLPIR PGERECPYYM RTGSCKYASN  60
CRFNHPDPTA IGGSDPPSRF GKDGPASLQV ASQSTVALWS APRPLNEAPV YTPMMIPPPQ  120
GVSSQNSEWN GCRAPAYIPE SSMPARPPYM MNNSVTETNV YKQYPLQIQV EEFPERPGQP  180
DCSYFLRTGD CKFKSNCKYH HPKTQTAVAP LFTLSDKGLP LRPDQNICTH YSRYGICKFG  240
PACKFDHSSH ISSSTTSGPD HQLPYGDWAT TNGAGIAGSR SGTDGTSQPQ PLLVASCKFT  300
ANPATQFQPP SPPAQNLPML PTGVLQPVSF TELVEIYRYY RSGLQSEFLE GVAVPLNPIN  360
NNRVDDQSGH PPSIPSPAPS DLDPEILELI RTLDPAVIEW IRNPDPAFLD EIRKSRELSL  420
KEKEDKEXKX RETQEETKKE RESEKSESGS GGGGNGNGGE VVKEVVEESS TSKRSRRRKN  480
KLMKVSKDKA MQGEELAEKQ DQTESKQEII VGDFVLEVSN DKAKPREGLA EKQDQTENKK  540
MVSKDKAKQR EELXEKQVQT ESKKKVTKDK AKQREELAVK QDQTESKKVS KEKAKQREEX  600
AEKQDQTKIK VSKDKAKQTE ELAEKQDQTE SKKKLSKDKA KQKEELAENQ DHTESKMKVS  660
KDKAKQREEL AEKQDXTESK IETFHVFPAS ALNFSGFS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.33371e-162cell culture| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498JJL40.0A0A498JJL4_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-95C3H family protein