PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000649022
Common NameAP2D56, LOC103400914
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 238aa    MW: 26451.1 Da    PI: 4.4623
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000649022genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-171666256
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                   +ykGVr +k +g+Wv+eIr p++   r r++lg+++ +e+Aa+a +aa  +l+g+
  MDP0000649022 16 KYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDAPEKAARAFDAALFCLRGH 66
                   8*****999.**********933...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.19E-281675No hitNo description
SuperFamilySSF541715.56E-201674IPR016177DNA-binding domain
PROSITE profilePS5103221.5351673IPR001471AP2/ERF domain
SMARTSM003801.3E-311679IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-281674IPR001471AP2/ERF domain
PfamPF008478.5E-111666IPR001471AP2/ERF domain
PRINTSPR003679.3E-91728IPR001471AP2/ERF domain
PRINTSPR003679.3E-93955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVKQTIGKPS ERNDIKYKGV RKRKWGKWVS EIRLPNSRER IWLGSYDAPE KAARAFDAAL  60
FCLRGHTAKF NFPDNPPEIS GGRSLSAAQI QTEAARFANS ELPRSHQSMS EFQAESQSMS  120
ELQAESQSMS ELQAESQSMS ELQAESRSPS VSEGSGTVFV ESEFLVTPND SFSDPFSTFG  180
SGNYATEYGL FAGFDEMNYQ FFSPAAAVPT PVVDYYAEEN LDGQFFSPAQ ESFLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1416731472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11723KGVRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.134160.0leaf| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324800.0GU732480.1 Malus x domestica AP2 domain class transcription factor (AP2D56) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306940.11e-174ethylene-responsive transcription factor ERF017
TrEMBLD5L1401e-173D5L140_MALDO; AP2 domain class transcription factor
STRINGXP_008337827.11e-174(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-58ERF family protein
Publications ? help Back to Top
  1. Tacken E, et al.
    The role of ethylene and cold temperature in the regulation of the apple POLYGALACTURONASE1 gene and fruit softening.
    Plant Physiol., 2010. 153(1): p. 294-305
    [PMID:20237022]